Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060627.seq
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 105 7e-24
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 77 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 63 3e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 55 7e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 50 2e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 50 4e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 48 1e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 1e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 47 2e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 47 2e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 3e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 6e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 45 1e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 43 3e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 43 4e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 41 1e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 40 2e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 40 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 2e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 2e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 36 0.005
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.019
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 33 0.025
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.075
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.075
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 30 0.23
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 3.7
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 3.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 3.7
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 26 4.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 6.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 6.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 105 bits (251), Expect = 7e-24
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
S TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +R
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR 225
Query: 477 NTCVFGGAPK 506
NTCV+GG P+
Sbjct: 226 NTCVYGGVPR 235
Score = 89.4 bits (212), Expect = 4e-19
Identities = 40/82 (48%), Positives = 53/82 (64%)
Frame = +2
Query: 14 RPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 193
+ DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP
Sbjct: 71 KKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFP 130
Query: 194 DYVQQGVKTMGYKEPTPIQAQA 259
+YV + VK +G++ PTPIQ QA
Sbjct: 131 NYVLKEVKQLGFEAPTPIQQQA 152
Score = 29.9 bits (64), Expect = 0.30
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 512 QARDLEKGVXIVIATPGSLIGFL 580
Q RDL +GV I IATPG L+ L
Sbjct: 238 QIRDLIRGVEICIATPGRLLDML 260
Score = 28.3 bits (60), Expect = 0.93
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 214 KDNGLQRTDAHSSSGWPIAMSGKNLVGVA 300
K G + WP+AMSG+++VG++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGIS 166
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 77.0 bits (181), Expect = 2e-15
Identities = 34/79 (43%), Positives = 52/79 (65%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 477 NTCVFGGAPKRSKPGTWRR 533
C +GGAP + + +R
Sbjct: 522 ACCAYGGAPIKDQIADLKR 540
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 20 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 196
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 197 YVQQGVKTMGYKEPTPIQAQA 259
+ ++GY++PT IQAQA
Sbjct: 428 QTISVINSLGYEKPTSIQAQA 448
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 506 KEQARDLEKGVXIVIATPGSLIGFLGKXA 592
K+Q DL++G IV+ TPG +I L A
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANA 560
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 63.3 bits (147), Expect = 3e-11
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 467
++TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL 352
Query: 468 YVRNTCVFGG 497
R V GG
Sbjct: 353 GFRCVSVVGG 362
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +2
Query: 116 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ A
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAA 279
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 506 KEQARDLEKGVXIVIATPGSLIGFL 580
+EQ+ + +G IV+ATPG L+ L
Sbjct: 366 EEQSFQMSQGAHIVVATPGRLLDCL 390
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 55.2 bits (127), Expect = 7e-09
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH--- 461
+QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA +
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 462 TSYVRNTCVFGGAPKRSKPGTWRR 533
+ ++ + V GG K+S+ R+
Sbjct: 245 SHWIVSCNVIGGEKKKSEKARIRK 268
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 50.4 bits (115), Expect = 2e-07
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
+QTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + V
Sbjct: 90 AQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 474 RNTCVFGG 497
R+ + GG
Sbjct: 144 RSVVIVGG 151
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 173 FEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
F+E D + + + +G+K PTPIQ +A
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEA 76
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLR 169
Query: 477 NTCVFGG 497
+ + GG
Sbjct: 170 SVAIVGG 176
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 47.6 bits (108), Expect = 1e-06
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 279 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 443
K+ +++TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.6 bits (108), Expect = 1e-06
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q + + ++
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLK 266
Query: 477 NTCVFGGAPK 506
V+GGAPK
Sbjct: 267 AVVVYGGAPK 276
Score = 32.3 bits (70), Expect = 0.057
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 107 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQA 253
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQA 193
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 47.2 bits (107), Expect = 2e-06
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQ 437
+QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 438 QVAADFGHTSYVRNTCVFGGAPKRSK 515
+ + F + S+VR V+GGA R++
Sbjct: 273 EESRKFCYRSWVRPCAVYGGADIRAQ 298
Score = 31.9 bits (69), Expect = 0.075
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 131 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 250
V VSG ++ P+ F ++ Q +K GY +PTP+Q
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQ 196
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 46.8 bits (106), Expect = 2e-06
Identities = 27/67 (40%), Positives = 37/67 (55%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT A+ LP I + P G AL+L PTRELA QI + A G ++
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLK 105
Query: 477 NTCVFGG 497
+ + GG
Sbjct: 106 HALIVGG 112
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.4 bits (105), Expect = 3e-06
Identities = 26/58 (44%), Positives = 34/58 (58%)
Frame = +3
Query: 279 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 452
K+ + TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 173 FEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
F+ N +++ V G+K+ TP+QA A
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANA 31
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 45.6 bits (103), Expect = 6e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
+++TG+GKTLA++L A + P +++L+PTRELA QI + A + + +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGI 141
Query: 474 RNTCVFGGAPKRSKPGTWRR 533
R + GG K + RR
Sbjct: 142 RVSYAIGGNSKMREENAIRR 161
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 44.8 bits (101), Expect = 1e-05
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 470
++TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA + +
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHH 189
Query: 471 VRNTCVFGGAPKRSK 515
V GGA +R++
Sbjct: 190 QTFGIVIGGANRRAE 204
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 506 KEQARDLEKGVXIVIATPGSLIGFL 580
+ +A L KGV +++ATPG L+ L
Sbjct: 202 RAEADKLVKGVNLLVATPGRLLDHL 226
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 43.2 bits (97), Expect = 3e-05
Identities = 26/67 (38%), Positives = 37/67 (55%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFS 141
Query: 477 NTCVFGG 497
+ GG
Sbjct: 142 AGLIIGG 148
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 42.7 bits (96), Expect = 4e-05
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
+SQ+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 474 RNTC-VFGGAPKRSK 515
+ + PK +K
Sbjct: 214 KTAFGIKDSVPKGAK 228
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
++Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 474 RNTCVFGG 497
GG
Sbjct: 117 ECHACIGG 124
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 479 HVCVWWCS*KEQARDLEKGVXIVIATPGSLIGFLGKXA 592
H C+ ++ L+ GV +V+ TPG + + + A
Sbjct: 119 HACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRA 156
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 40.3 bits (90), Expect = 2e-04
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +3
Query: 279 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 458
K+ + TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIA 354
Query: 459 HTSYVRNTCVFGG 497
+ + GG
Sbjct: 355 SFTDIMVCLCIGG 367
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 482 VCVWWCS*KEQARDLEKGVXIVIATPGSLI 571
+C+ S K Q ++L K IVIATPG I
Sbjct: 363 LCIGGLSLKLQEQELRKRPDIVIATPGRFI 392
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
R++ G+GKT A+++P++ ++ + + L+L PTRELA Q QV G V
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNV 141
Query: 474 RNTCVFGGAPKR 509
+ GG R
Sbjct: 142 KVMVTTGGTTLR 153
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 446
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 440
++ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 470
++Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 471 VRNTCVFG 494
+ C+ G
Sbjct: 119 QCHACIGG 126
Score = 31.9 bits (69), Expect = 0.075
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 107 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQAGR*LCLER 283
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++A +C R
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGR 59
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.019
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 434
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.025
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFG-HTS 467
++++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F +
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 468 YVRNTCVFGG 497
VR +GG
Sbjct: 148 DVRTAVFYGG 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.075
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 434
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.075
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 434
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 433 FSKLLQILDTHLMFVTRVCLVVLLKGASPGLGEG 534
F KL I ++F ++C V ++G+SP LGEG
Sbjct: 840 FEKLEDIPGKVVVFERKICAVYPVEGSSPPLGEG 873
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 235 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 110
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 95 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 226
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 8 RRRPDWDSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQ 169
R++ D V L PF K FYDP P LK + +E+ + V +H P+Q
Sbjct: 106 RKKKTIDVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 95 PYEVEEYRNKHEVTVS 142
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 202 ATRCKDNGLQRTDAHSSSGWPIAMSGKNLVGVAKRV 309
A + ++N +QR + G PI KNL+ +AKR+
Sbjct: 97 ALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRM 132
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 428
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 224 PLSLHLVAHNQENL--LLQSIE 165
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,499
Number of Sequences: 5004
Number of extensions: 57073
Number of successful extensions: 200
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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