Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060627.seq
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 87 1e-17
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 67 9e-12
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 57 1e-08
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 50 1e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 47 1e-05
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 46 2e-05
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 46 2e-05
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 41 0.001
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 40 0.001
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 39 0.004
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 39 0.004
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 38 0.008
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 37 0.011
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 36 0.034
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 35 0.045
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 33 0.18
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 33 0.18
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.3
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.0
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 28 6.9
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = +3
Query: 327 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 506
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G +R+TC++GGAPK
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPK 172
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +2
Query: 89 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 256
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 512 QARDLEKGVXIVIATPGSLIGFL 580
Q R+LE+GV I IATPG LI L
Sbjct: 175 QIRELERGVEICIATPGRLIDML 197
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/70 (52%), Positives = 47/70 (67%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG +
Sbjct: 561 AKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIH 620
Query: 477 NTCVFGGAPK 506
VFGG K
Sbjct: 621 VVAVFGGGNK 630
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +2
Query: 17 PDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 196
P+ + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 197 YVQQGVKTMGYKEPTPIQAQA 259
+ ++ + Y +PT IQ QA
Sbjct: 527 QMMASIRKLEYTQPTQIQCQA 547
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 509 EQARDLEKGVXIVIATPGSLI 571
EQ++ L++G IV+ATPG LI
Sbjct: 632 EQSKALQEGAEIVVATPGRLI 652
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 67.3 bits (157), Expect = 9e-12
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFGHT 464
++TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 145 AETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRP 204
Query: 465 SYVRNTCVFGGAPK 506
+R V GGA +
Sbjct: 205 LGIRTVSVIGGADR 218
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 113 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ QA
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQA 131
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 434
++TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 116 AETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 47 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 226
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 227 YKEPTPIQAQA 259
++ PTPIQ Q+
Sbjct: 92 FQVPTPIQMQS 102
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
+QTGSGKT AY+LP + + Q P+AL +APTRELA+QI A F + ++
Sbjct: 523 AQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIK 582
Query: 477 NTCVFGG 497
+GG
Sbjct: 583 VCVCYGG 589
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 137 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
VSG I F E F + + + GY+ PTP+Q A
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAA 509
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 20 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYR-NKHEVTVSGVEVHNPIQYFEEANFPD 196
D +V QPF K+FY P + K +P E +E+R + + V G P++ + +
Sbjct: 55 DHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQL 114
Query: 197 YVQQGVKTMGYKEPTPIQAQA 259
+ +K Y++PTPIQAQA
Sbjct: 115 KILDVLKKNSYEKPTPIQAQA 135
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +3
Query: 315 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 494
K +Y P + P I G IA+V+ PTRELA QI + F + +R CV+G
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYG 180
Query: 495 G 497
G
Sbjct: 181 G 181
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 464
+QTGSGKT A++LP + + N P A+ +APTRELA QI A F H
Sbjct: 755 AQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHG 814
Query: 465 SYVRNTCVFGG 497
+ +R +GG
Sbjct: 815 TMLRPVVCYGG 825
Score = 35.1 bits (77), Expect = 0.045
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 5/165 (3%)
Frame = +2
Query: 107 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQAGR*LCLERI 286
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q + + R
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 287 *LA*PN-GFRQNVGLHL----ASNCAHK*PTAYSER*WSDCFGLGAYQRVSXTNSASCCR 451
+A G + L + A +++SE + + ++ +
Sbjct: 751 VMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARK 810
Query: 452 FWTHILCS*HVCVWWCS*KEQARDLEKGVXIVIATPGSLIGFLGK 586
F + VC S Q R L+ G +++ TPG L F+ K
Sbjct: 811 FAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLVGTPGRLTDFIEK 855
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +2
Query: 62 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 241
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 242 PIQAQ 256
PIQ Q
Sbjct: 221 PIQMQ 225
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 470
+++TG+GKTL++ LP + + + + +RG P LV+APTRELA+Q+ + S
Sbjct: 116 QARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQVGNEFENL--KSN 173
Query: 471 VRNTCVFGGAP 503
+ C++GG P
Sbjct: 174 LEVYCIYGGMP 184
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADFGHTSY 470
++Q+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V G +
Sbjct: 128 QAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMH 187
Query: 471 VRNTCVFGGAPKR 509
V+ GG R
Sbjct: 188 VKCHACIGGTNVR 200
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 455 WTHILCS*HVCVWWCS*KEQARDLEKGVXIVIATPGSLIGFLGK 586
+ H+ C H C+ + +E LE+GV +V+ TPG + + +
Sbjct: 185 YMHVKC--HACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMINR 226
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVAADFGH 461
+QTGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A H
Sbjct: 422 AQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCH 480
Query: 462 TSYVRNTCVFGGAPKR 509
+ R+ + GG ++
Sbjct: 481 HARFRSVGLIGGRKQK 496
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +2
Query: 101 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQA 259
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ QA
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQA 193
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 327 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 434
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/75 (33%), Positives = 42/75 (56%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT A+++P + G AL+L+PTRELA Q Q+ + G + ++
Sbjct: 325 ARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKELGRFTGLK 381
Query: 477 NTCVFGGAPKRSKPG 521
++ + GG + PG
Sbjct: 382 SSVILGGDSVVATPG 396
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G+ +
Sbjct: 94 AKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIGNKHDLS 152
Query: 477 NTCVFGG 497
+ GG
Sbjct: 153 AGLIIGG 159
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/68 (39%), Positives = 39/68 (57%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
++Q+G+GKT + + + I+ Q +R P ALVL+PTRELA QIQ+V G V
Sbjct: 40 QAQSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQIQKVVLALGDYMSV 94
Query: 474 RNTCVFGG 497
+ GG
Sbjct: 95 QCHACIGG 102
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTLA+++P +V + + + +G ++++PTREL+ Q VA D
Sbjct: 616 AKTGSGKTLAFLVP-VVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARDLLKHHNFT 674
Query: 477 NTCVFGGAPKRSK 515
+ GG ++++
Sbjct: 675 YGIIMGGVNRKAE 687
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 506 KEQARDLEKGVXIVIATPGSLIGFL 580
K +A L+KGV ++IATPG L+ L
Sbjct: 685 KAEAERLQKGVNLLIATPGRLLDHL 709
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 41.1 bits (92), Expect = 7e-04
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHIN-------NQPPI-------RRGDGPIALVLAPTRELAQQI 434
++TGSGKTLA+ +P I HI Q P +G +AL++APTRELA Q+
Sbjct: 175 AETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQV 234
Query: 435 QQVAADFGHTSYVRNTCVFGG--APKRSK 515
+ + V+ + GG APK+ +
Sbjct: 235 KDHLVKAAKYTSVKVAAIVGGMAAPKQQR 263
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT A+ LP + + + P G A+VL PTRELA QI G ++
Sbjct: 51 AKTGSGKTAAFALPILQKLCDDPY-----GIFAVVLTPTRELAFQIADQFKVLGRPIGLK 105
Query: 477 NTCVFGG 497
+ GG
Sbjct: 106 EAVIVGG 112
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/73 (35%), Positives = 37/73 (50%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT A+ LP + + + P AL+L PTRELA QI + G V+
Sbjct: 8 AETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALGSGIGVK 62
Query: 477 NTCVFGGAPKRSK 515
+ GG S+
Sbjct: 63 CAVIVGGIDMMSQ 75
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 458
R++ G+GKT AY++P + + + ALVL PTRELA Q Q+ + G
Sbjct: 90 RAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 458
R++ G+GKT AY++P + + + ALVL PTRELA Q Q+ + G
Sbjct: 90 RAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 470
+SQ+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H +
Sbjct: 148 QSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKHCPH 202
Query: 471 VR-NTCVFGGAPKRSKPGT 524
++ N V G R + T
Sbjct: 203 IKINYAVRGNQFPRGQKCT 221
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 122 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ A
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETA 133
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 198 MCNKV*RQWVTKNRRPFKLRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRR 377
+ K+ + +TK + L + K +S+TG+GK+L ++LP++ Q P R
Sbjct: 171 LVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GR 224
Query: 378 GDGPIALVLAPTRELA-QQIQQVAADFGHTSYV 473
G G I ++ PTRELA Q + +V+ G S V
Sbjct: 225 GYGTI--IVVPTRELASQMLYEVSRLLGDKSIV 255
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3
Query: 387 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 497
P ALVL+PTRELA QIQ+V G V+ GG
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGG 40
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 35.1 bits (77), Expect = 0.045
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 107 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 250
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQ 161
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 431
TG+GKT A++LP + + +P + LV+ PTRELA Q
Sbjct: 56 TGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAIQ 96
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 306 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD-FGHTSYV 473
GSGK LAY+LP I I + +GP+ L+L + ++ V D +
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCEDLIRNRRRT 293
Query: 474 RNTCVFGGAPKRSK 515
R +FGG + +
Sbjct: 294 RVQMIFGGGAEEDR 307
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 461 HILCS*HVCVWWCS*KEQARDLEKGVXIVIATPGSLIGFLGK 586
H+ C H C+ + +E LE+GV +V+ TPG + + +
Sbjct: 2 HVKC--HACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMINR 41
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 95 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 226
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 107 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 199
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 164 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
I FE+ + + + V GYK+PTP+Q A
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYA 905
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPP 368
+QTGSGKT A+++P + I + P
Sbjct: 919 AQTGSGKTAAFLIPILSRIYMEGP 942
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 458
++++G+GKT + + A+ ++ I + ++L PTRE+A Q++ V G
Sbjct: 56 QAKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPTREIAVQVKDVICAIG 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,548
Number of Sequences: 59808
Number of extensions: 437007
Number of successful extensions: 931
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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