Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060627.seq
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       44   1e-06
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +2

Query: 128 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q  A
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHA 226



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 297 SQTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADFGHT 464
           +QTGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   
Sbjct: 240 AQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLN 299

Query: 465 SYVRNTCVFGG 497
           S ++    +GG
Sbjct: 300 SILKTVVAYGG 310



 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 512 QARDLEKGVXIVIATPGSLIGFLGK 586
           Q   L  G  I++ATPG L+ F+ K
Sbjct: 316 QRGKLSAGCHILVATPGRLLDFVEK 340


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 216 RQWVTKNRRPFKLRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINN 359
           R+WV+   RPF++R  D Y  +     S       +A +   + H+ N
Sbjct: 454 RRWVSTMSRPFEVRY-DPYTQRVEILDSVDRLDNLMAQVNTEMTHLTN 500


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 407 RQDQSNRTITSPNRRLVIYVHNCW 336
           +Q QS +TIT     +VI    CW
Sbjct: 250 KQVQSRKTITRMLSAVVITFFICW 273



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 243 PFKLRLADSYVWKEFSWRSQTGSGKTLAYI 332
           PF+L    S  W+++ W+   G  K  AY+
Sbjct: 88  PFEL----SVFWQQYPWQWGLGICKLRAYV 113


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 86  KRSPYEVEEYRNKHEVTV 139
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,464
Number of Sequences: 438
Number of extensions: 3684
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)