Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060627.seq
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 106 1e-23
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 99 1e-21
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 99 1e-21
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 78 4e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 75 4e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 75 4e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 75 4e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 75 4e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 75 4e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 75 5e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 71 8e-13
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 68 6e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 61 5e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 56 2e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 55 3e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 55 4e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 54 1e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 54 1e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 54 1e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 53 1e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 4e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 52 4e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 4e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 50 1e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 5e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 48 5e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 2e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 3e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 3e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 46 3e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 8e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 1e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 1e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 2e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 3e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 6e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.001
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 0.001
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 0.001
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.003
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.003
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 38 0.007
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.007
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 37 0.012
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.016
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.016
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.016
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 36 0.016
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 36 0.016
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 36 0.028
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.037
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.065
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.20
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 31 0.46
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 31 0.46
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 31 0.60
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 1.8
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 1.8
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 1.8
At3g47350.1 68416.m05148 short-chain dehydrogenase/reductase (SD... 28 4.2
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.2
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.2
At1g80000.2 68414.m09359 expressed protein identical to unknown ... 28 5.6
At1g80000.1 68414.m09358 expressed protein identical to unknown ... 28 5.6
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 27 7.4
At1g11920.1 68414.m01376 pectate lyase family protein similar to... 27 9.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 106 bits (254), Expect = 1e-23
Identities = 46/70 (65%), Positives = 58/70 (82%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIK 202
Query: 477 NTCVFGGAPK 506
TC++GG PK
Sbjct: 203 TTCIYGGVPK 212
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/77 (48%), Positives = 47/77 (61%)
Frame = +2
Query: 26 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 205
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 206 QGVKTMGYKEPTPIQAQ 256
+ VK G+ EPTPIQ+Q
Sbjct: 112 EEVKKAGFTEPTPIQSQ 128
Score = 35.5 bits (78), Expect = 0.028
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 512 QARDLEKGVXIVIATPGSLIGFL 580
Q RDL+KGV IVIATPG LI +
Sbjct: 215 QVRDLQKGVEIVIATPGRLIDMM 237
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 214 KDNGLQRTDAHSSSGWPIAMSGKNLVGVAK 303
K G S GWP+AM G++L+G+A+
Sbjct: 115 KKAGFTEPTPIQSQGWPMAMKGRDLIGIAE 144
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 99 bits (238), Expect = 1e-21
Identities = 44/70 (62%), Positives = 58/70 (82%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 477 NTCVFGGAPK 506
+TC++GGAPK
Sbjct: 269 STCIYGGAPK 278
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/74 (41%), Positives = 48/74 (64%)
Frame = +2
Query: 35 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 214
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 215 KTMGYKEPTPIQAQ 256
+G+ EPTPIQAQ
Sbjct: 181 AKLGFTEPTPIQAQ 194
Score = 33.9 bits (74), Expect = 0.085
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2
Query: 512 QARDLEKGVXIVIATPGSLIGFL 580
Q RDL +GV IVIATPG LI L
Sbjct: 281 QIRDLRRGVEIVIATPGRLIDML 303
Score = 29.1 bits (62), Expect = 2.4
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +1
Query: 250 SSGWPIAMSGKNLVGVAK 303
+ GWP+A+ G++L+G+A+
Sbjct: 193 AQGWPMALKGRDLIGIAE 210
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 99 bits (238), Expect = 1e-21
Identities = 44/70 (62%), Positives = 58/70 (82%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 477 NTCVFGGAPK 506
+TC++GGAPK
Sbjct: 269 STCIYGGAPK 278
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/74 (41%), Positives = 48/74 (64%)
Frame = +2
Query: 35 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 214
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 215 KTMGYKEPTPIQAQ 256
+G+ EPTPIQAQ
Sbjct: 181 AKLGFTEPTPIQAQ 194
Score = 33.9 bits (74), Expect = 0.085
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2
Query: 512 QARDLEKGVXIVIATPGSLIGFL 580
Q RDL +GV IVIATPG LI L
Sbjct: 281 QIRDLRRGVEIVIATPGRLIDML 303
Score = 29.1 bits (62), Expect = 2.4
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +1
Query: 250 SSGWPIAMSGKNLVGVAK 303
+ GWP+A+ G++L+G+A+
Sbjct: 193 AQGWPMALKGRDLIGIAE 210
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/68 (51%), Positives = 46/68 (67%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIR 632
Query: 477 NTCVFGGA 500
V+GG+
Sbjct: 633 CVPVYGGS 640
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +2
Query: 20 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 199
D + +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 200 VQQGVKTMGYKEPTPIQAQA 259
+ +K + Y++P PIQ QA
Sbjct: 540 ILDTMKKLNYEKPMPIQTQA 559
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 74.9 bits (176), Expect = 4e-14
Identities = 34/68 (50%), Positives = 45/68 (66%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGII 499
Query: 477 NTCVFGGA 500
V+GG+
Sbjct: 500 CVPVYGGS 507
Score = 57.2 bits (132), Expect = 8e-09
Identities = 26/80 (32%), Positives = 42/80 (52%)
Frame = +2
Query: 20 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 199
D + +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 200 VQQGVKTMGYKEPTPIQAQA 259
+ +K + Y++P PIQAQA
Sbjct: 407 ILDTLKKLNYEKPMPIQAQA 426
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.9 bits (176), Expect = 4e-14
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 477 NTCVFGGAPK 506
TC++GGAPK
Sbjct: 261 CTCLYGGAPK 270
Score = 60.5 bits (140), Expect = 9e-10
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
Frame = +2
Query: 68 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 247
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 248 QAQAGR*LCLER-I*LA*PNGFRQNVGLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVS 424
QAQ+ R I G + +G +L H R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 425 XTNSASCCRFW--THILCS*HVCVWWCS*K-EQARDLEKGVXIVIATPGSL 568
+F + I C+ C++ + K Q RDLE+G IV+ATPG L
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRL 291
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 250 SSGWPIAMSGKNLVGVAK 303
+ WPIAM G+++V +AK
Sbjct: 186 AQSWPIAMQGRDIVAIAK 203
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.9 bits (176), Expect = 4e-14
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 477 NTCVFGGAPK 506
TC++GGAPK
Sbjct: 261 CTCLYGGAPK 270
Score = 60.5 bits (140), Expect = 9e-10
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
Frame = +2
Query: 68 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 247
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 248 QAQAGR*LCLER-I*LA*PNGFRQNVGLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVS 424
QAQ+ R I G + +G +L H R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 425 XTNSASCCRFW--THILCS*HVCVWWCS*K-EQARDLEKGVXIVIATPGSL 568
+F + I C+ C++ + K Q RDLE+G IV+ATPG L
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRL 291
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 250 SSGWPIAMSGKNLVGVAK 303
+ WPIAM G+++V +AK
Sbjct: 186 AQSWPIAMQGRDIVAIAK 203
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 74.9 bits (176), Expect = 4e-14
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 477 NTCVFGGAPK 506
TC++GGAPK
Sbjct: 261 CTCLYGGAPK 270
Score = 60.5 bits (140), Expect = 9e-10
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
Frame = +2
Query: 68 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 247
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 248 QAQAGR*LCLER-I*LA*PNGFRQNVGLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVS 424
QAQ+ R I G + +G +L H R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 425 XTNSASCCRFW--THILCS*HVCVWWCS*K-EQARDLEKGVXIVIATPGSL 568
+F + I C+ C++ + K Q RDLE+G IV+ATPG L
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRL 291
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 250 SSGWPIAMSGKNLVGVAK 303
+ WPIAM G+++V +AK
Sbjct: 186 AQSWPIAMQGRDIVAIAK 203
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 74.9 bits (176), Expect = 4e-14
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLR 331
Query: 477 NTCVFGGAPKRSK 515
+ V+GG K +
Sbjct: 332 VSAVYGGMSKHEQ 344
Score = 67.3 bits (157), Expect = 7e-12
Identities = 27/80 (33%), Positives = 45/80 (56%)
Frame = +2
Query: 20 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 199
D S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 200 VQQGVKTMGYKEPTPIQAQA 259
+ +K Y++PT IQ QA
Sbjct: 239 IMSAIKKQAYEKPTAIQCQA 258
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 509 EQARDLEKGVXIVIATPGSLIGFL 580
EQ ++L+ G IV+ATPG LI L
Sbjct: 343 EQFKELKAGCEIVVATPGRLIDML 366
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 74.5 bits (175), Expect = 5e-14
Identities = 36/70 (51%), Positives = 49/70 (70%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRIS 537
Query: 477 NTCVFGGAPK 506
TC++GGAPK
Sbjct: 538 CTCLYGGAPK 547
Score = 50.8 bits (116), Expect = 7e-07
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +2
Query: 50 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 217
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 218 TMGYKEPTPIQAQ 256
+ G+ PTPIQAQ
Sbjct: 452 SAGFPSPTPIQAQ 464
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 70.5 bits (165), Expect = 8e-13
Identities = 35/70 (50%), Positives = 46/70 (65%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKIS 331
Query: 477 NTCVFGGAPK 506
C++GGAPK
Sbjct: 332 CACLYGGAPK 341
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 107 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 196
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 512 QARDLEKGVXIVIATPGSL 568
Q +++E+GV IV+ATPG L
Sbjct: 344 QLKEIERGVDIVVATPGRL 362
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.7 bits (158), Expect = 6e-12
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTS 467
++TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL 416
Query: 468 YVRNTCVFGG 497
R T + GG
Sbjct: 417 GFRVTSIVGG 426
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 113 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ A
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAA 343
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 61.3 bits (142), Expect = 5e-10
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 464
++TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEP 217
Query: 465 SYVRNTCVFGGAPK 506
+++ CV+GG+ K
Sbjct: 218 CGLKSICVYGGSSK 231
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 461
+QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSY 262
Query: 462 TSYVRNTCVFGGAP 503
+ V+ +GG P
Sbjct: 263 QTGVKVVVAYGGTP 276
Score = 31.5 bits (68), Expect = 0.46
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = +2
Query: 11 RRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEE 181
R WD + PF + +P P ++ + + + SG V P+ F E
Sbjct: 104 RSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAE 163
Query: 182 ANFPDYVQQGVKTMGYKEPTPIQAQA 259
+ + + ++ Y +PTP+Q A
Sbjct: 164 IDLGEALNLNIRRCKYVKPTPVQRHA 189
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 509 EQARDLEKGVXIVIATPGSL 568
+Q R+LE+GV I++ATPG L
Sbjct: 279 QQLRELERGVDILVATPGRL 298
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 55.2 bits (127), Expect = 3e-08
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 461
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 462 TSY--VRNTCVFGGAPKRSK 515
Y +R+ GG RS+
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQ 222
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +2
Query: 59 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 238
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 239 TPIQAQ 256
TPIQ Q
Sbjct: 121 TPIQVQ 126
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 482 VCVWWCS*KEQARDLEKGVXIVIATPGSLIGFLGK 586
+C+ + Q ++KGV IV+ATPG L L K
Sbjct: 212 LCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAK 246
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 214 KDNGLQRTDAHSSSGWPIAMSGKNLVGVA 300
KD G+ G P+ +SG++++G+A
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIA 141
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 54.8 bits (126), Expect = 4e-08
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 461
+QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSY 249
Query: 462 TSYVRNTCVFGGAP 503
+ V+ +GG P
Sbjct: 250 QTGVKVVVAYGGTP 263
Score = 30.7 bits (66), Expect = 0.80
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +2
Query: 11 RRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 181
R WD PF N DP + + E Y + + SG V P+ F E
Sbjct: 92 RSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAE 150
Query: 182 ANFPDYVQQGVKTMGYKEPTPIQAQA 259
+ + + ++ Y +PTP+Q A
Sbjct: 151 IDLGEALNLNIQRCKYVKPTPVQRNA 176
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 509 EQARDLEKGVXIVIATPGSL 568
+Q R+LE+GV I++ATPG L
Sbjct: 266 QQIRELERGVDILVATPGRL 285
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 461
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 462 TSYVRNTCVFGGAP 503
+ V+ +GG P
Sbjct: 255 QTGVKVVVAYGGTP 268
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 131 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQAGR*LCLER 283
V SG +V P+ F + + D + ++ Y PTP+Q A L ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 509 EQARDLEKGVXIVIATPGSL 568
+Q R+LE+G I++ATPG L
Sbjct: 271 QQLRELERGCDILVATPGRL 290
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 461
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 462 TSYVRNTCVFGGAP 503
+ V+ +GG P
Sbjct: 255 QTGVKVVVAYGGTP 268
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 131 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQAGR*LCLER 283
V SG +V P+ F + + D + ++ Y PTP+Q A L ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 509 EQARDLEKGVXIVIATPGSL 568
+Q R+LE+G I++ATPG L
Sbjct: 271 QQLRELERGCDILVATPGRL 290
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 470
R++TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203
Query: 471 VRNT-CVFGGAP 503
+T C++GG P
Sbjct: 204 SLDTICLYGGTP 215
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 458
R++TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 459 HTSYVRNTCVFGGAPKRSKPGTWRR 533
+ + + C++GG + G +R
Sbjct: 199 GSLGLSSCCLYGGDSYPVQEGKLKR 223
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 461
S TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 462 TSYVRNTCVFGGA 500
+ R+ V GG+
Sbjct: 215 HARFRSILVSGGS 227
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 455
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 62 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 241
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 242 PIQAQ 256
PIQ Q
Sbjct: 171 PIQVQ 175
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 482 VCVWWCS*KEQARDLEKGVXIVIATPGSLIGFLGK 586
+C+ + Q +++GV IV+ATPG L L K
Sbjct: 261 LCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAK 295
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 51.6 bits (118), Expect = 4e-07
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 470
R++TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215
Query: 471 VRNT-CVFGGAP 503
+T C++GG P
Sbjct: 216 SLDTICLYGGTP 227
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 476
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 477 NTCVFGGAPKRSKPGTWRR 533
V GG K + R+
Sbjct: 136 PGYVMGGEKKAKEKARLRK 154
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 506 KEQARDLEKGVXIVIATPGSLIGFLGKXA 592
KE+AR L KG+ I+IATPG L+ L A
Sbjct: 147 KEKAR-LRKGISILIATPGRLLDHLKNTA 174
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 458
R++TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 459 HTSYVRNTCVFGG 497
Y+ CV+GG
Sbjct: 203 SAPYLSTVCVYGG 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 467
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 213
Query: 468 YVRNTCVFGGAP 503
+ V GG P
Sbjct: 214 PFKTALVVGGDP 225
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 92 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQA 259
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ QA
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQA 140
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 467
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 76
Query: 468 YVRNTCVFGGAP 503
+ V GG P
Sbjct: 77 PFKTALVVGGDP 88
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +3
Query: 279 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 431
K+ +++TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 470
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 471 VRNTCVFGGAPKRSKPGTWRRE 536
V + + GG + T E
Sbjct: 120 VNSVLLVGGREVEADMNTLEEE 141
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +3
Query: 279 KEFSWRSQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 434
K+ R++TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 279 KEFSWRSQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 455
K+ ++TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEEL 184
Query: 456 GHTSYVRNTCVFGGAPKRSK 515
+ V GG +RS+
Sbjct: 185 LKHHSQTVSMVIGGNNRRSE 204
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
++TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
Query: 477 NTCVFGG 497
+ + GG
Sbjct: 129 VSLLVGG 135
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 173 FEEANFPDYVQQGVKTMGYKEPTPIQ 250
FE N V +K GYK PTPIQ
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQ 55
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 506 KEQARDLEKGVXIVIATPGSLIGFLGK 586
++Q +L KG ++IATPG L+ L +
Sbjct: 139 EDQFEELTKGPDVIIATPGRLMHLLSE 165
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/67 (41%), Positives = 38/67 (56%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 476
+QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 102 AQTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLR 156
Query: 477 NTCVFGG 497
+ + GG
Sbjct: 157 CSVIVGG 163
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +3
Query: 279 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 431
K+ +++TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +3
Query: 279 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 431
K+ +++TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +3
Query: 276 WKEFSWRSQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 446
+K+ + + TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 447 ADFGHT-SYVRNTCVFGG 497
F T + V + + GG
Sbjct: 111 QPFVSTLANVNSVLLVGG 128
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 446
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 482
TGSGKT A+ LP + + +P +R L+L PTRELA QI + + + ++
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCG 270
Query: 483 CVFGGAPKRSK 515
+ GG R +
Sbjct: 271 LIVGGLSVREQ 281
Score = 34.7 bits (76), Expect = 0.049
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2
Query: 134 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA 253
TV GV H F E N + + +T+GYK+PTPIQA
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQA 195
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Frame = +3
Query: 225 VTKNRRPFKLRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPI 392
+ K R L++ K+ +++TG+GK++A++LPAI + N+ + +
Sbjct: 348 ILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIF 407
Query: 393 ALVLAPTRELAQQI 434
AL+L PTRELA QI
Sbjct: 408 ALILCPTRELASQI 421
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 452
++TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 198 ARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +2
Query: 41 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 220
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 221 MGYKEPTPIQAQA 259
MG+ T IQA+A
Sbjct: 172 MGFARMTQIQAKA 184
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 506 KEQARDLEKGVXIVIATPGSLIGFL 580
K +A L KGV +++ATPG L+ L
Sbjct: 267 KTEAEILAKGVNLLVATPGRLLDHL 291
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 443
S TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +3
Query: 225 VTKNRRPFKLRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPI 392
+ K R L++ K+ +++TG+GK++A++LPAI + N+ + +
Sbjct: 395 IVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIF 454
Query: 393 ALVLAPTRELAQQI 434
L+L PTRELA QI
Sbjct: 455 VLILCPTRELASQI 468
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 300 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 467
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 468 Y-VRNTCVFGGAPKRSK 515
R+ V GG +R++
Sbjct: 479 VPFRSMVVTGGFRQRTQ 495
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 431
++TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 115 ARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 474 RNTCVFGG 497
+ GG
Sbjct: 229 QVMVTTGG 236
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 474 RNTCVFGG 497
+ GG
Sbjct: 229 QVMVTTGG 236
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADF 455
+QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 53 AQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL 112
Query: 456 GHTSYVRNTCVFGG 497
G +R + GG
Sbjct: 113 GADISLRCAVLVGG 126
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +3
Query: 297 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 446
+QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +2
Query: 116 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQA 259
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ QA
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQA 171
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 303 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 431
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 474 RNTCVFGGAPKR 509
+ GG R
Sbjct: 222 QVMVTTGGTSLR 233
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 474 RNTCVFGGAPKR 509
+ GG R
Sbjct: 222 QVMVTTGGTSLR 233
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 473
R++ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251
Query: 474 RNTCVFGGAPKR 509
GG R
Sbjct: 252 EVMVTTGGTSLR 263
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +3
Query: 393 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 509
ALVLAPTRELAQQI++V G V+ GG R
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR 150
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 485 CVWWCS*KEQARDLEKGVXIVIATPGSLIGFL 580
CV S +E R L+ GV +V+ TPG + L
Sbjct: 143 CVGGTSVREDQRVLQSGVHVVVGTPGRVFDLL 174
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +3
Query: 393 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 509
ALVLAPTRELAQQI++V G V+ GG R
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVR 148
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 479 HVCVWWCS*KEQARDLEKGVXIVIATPGSLIGFL 580
H CV S +E R L+ GV +V+ TPG + L
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 35.5 bits (78), Expect = 0.028
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +3
Query: 393 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 509
ALVLAPTRELAQQI++V G V+ GG R
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR 148
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 479 HVCVWWCS*KEQARDLEKGVXIVIATPGSLIGFL 580
H CV S +E R L+ GV +V+ TPG + L
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.1 bits (77), Expect = 0.037
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 458
++ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 34.3 bits (75), Expect = 0.065
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 434
+S TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.7 bits (71), Expect = 0.20
Identities = 34/134 (25%), Positives = 51/134 (38%)
Frame = +2
Query: 161 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQAGR*LCLERI*LA*PNGFRQNVGLHLAS 340
PI+ F++ D V +GV GYK+P+ IQ +A + R +A + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 341 NCAHK*PTAYSER*WSDCFGLGAYQRVSXTNSASCCRFWTHILCS*HVCVWWCS*KEQAR 520
C S R L + ++ + H H C+ S E +
Sbjct: 80 VCQ---IVNISSR-KVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIK 135
Query: 521 DLEKGVXIVIATPG 562
LE+GV V TPG
Sbjct: 136 KLERGVHAVSGTPG 149
Score = 31.5 bits (68), Expect = 0.46
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 294 RSQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 464
++Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 465 SYVRNTCVFG 494
+ + C+ G
Sbjct: 118 NIQAHACIGG 127
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 31.5 bits (68), Expect = 0.46
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Frame = +3
Query: 267 SYVWKEFSWRSQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 401
+Y K+ ++TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 402 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 497
+ PTRELA Q+ + + V+ + GG
Sbjct: 285 ITPTRELALQVTEHLENAAKNLSVKVVPIVGG 316
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 177 KKQIFLIMCNKV*RQWVTKNRRPFKLRLADSYVWKEFSWRSQTGSGKTLAYILPA 341
K ++F C K Q+ + FK+ D+ K + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 31.1 bits (67), Expect = 0.60
Identities = 35/143 (24%), Positives = 54/143 (37%)
Frame = +2
Query: 134 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQAGR*LCLERI*LA*PNGFR 313
T G+E PI F + + V +GV G+++P+ IQ +A + R +A
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 314 QNVGLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVSXTNSASCCRFWTHILCS*HVCVW 493
+ S C T+ E L + ++ + H H C+
Sbjct: 84 GKTSMIALSVCQVV-DTSSRE---VQALILSPTRELATQTEKTIQAIGLHANIQAHACIG 139
Query: 494 WCS*KEQARDLEKGVXIVIATPG 562
S E R LE GV +V TPG
Sbjct: 140 GNSVGEDIRKLEHGVHVVSGTPG 162
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 393 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGA 500
AL+L+PTRELA Q ++ G H + + C+ G +
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS 142
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 434
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 434
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 294 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 434
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g47350.1 68416.m05148 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 308
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 433 FSKLLQILDTHLMFVTRVCLVVLLKGASPGLGE 531
F+KL+ L HL F VVL+ GAS G+GE
Sbjct: 29 FTKLMSCLK-HLHFENVTGKVVLITGASSGIGE 60
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 53 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 208
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 53 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 208
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At1g80000.2 68414.m09359 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 302 LATPTKFFPDIAIGQPELEWASVLCNPLSL 213
+A P F P+ G PE+ W +L P +L
Sbjct: 500 MALPGYFQPEHGTGNPEMTWLPILAGPGAL 529
>At1g80000.1 68414.m09358 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 302 LATPTKFFPDIAIGQPELEWASVLCNPLSL 213
+A P F P+ G PE+ W +L P +L
Sbjct: 500 MALPGYFQPEHGTGNPEMTWLPILAGPGAL 529
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 5 TRRRPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHN 160
T R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 108 TDLRHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At1g11920.1 68414.m01376 pectate lyase family protein similar to
pectate lyase GI:14289169 from [Salix gilgiana]
Length = 384
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 255 RLADSYVWKEFSWRSQTGSGKTLAYILPA 341
R+ Y WK + WR+ K AY +P+
Sbjct: 315 RIDSGYDWKRWKWRTSKDVFKNGAYFVPS 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,472
Number of Sequences: 28952
Number of extensions: 302648
Number of successful extensions: 929
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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