Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060626.seq
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 140 9e-34
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 135 3e-32
08_02_0657 - 19749835-19751942,19753123-19753561 98 6e-21
07_03_0500 - 18798893-18799893,18801616-18801701,18801742-188018... 29 2.6
07_03_0501 - 18820554-18821548,18821960-18822182 28 7.9
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 140 bits (339), Expect = 9e-34
Identities = 66/122 (54%), Positives = 81/122 (66%)
Frame = +1
Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 426
L +GK+RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 427 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETDXSPFCIVA 606
PIDD+VEG+TGNLF+ +LKPYF+EAYR G FKV+ETD + +CIVA
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVA 184
Query: 607 XD 612
D
Sbjct: 185 PD 186
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +2
Query: 86 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 256
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLL+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLK 67
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 TVIHCDGEPIKREEEE 661
T I CDGEPIKRE+EE
Sbjct: 187 TEIFCDGEPIKREDEE 202
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 135 bits (327), Expect = 3e-32
Identities = 64/122 (52%), Positives = 80/122 (65%)
Frame = +1
Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 426
L +GK+RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 427 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETDXSPFCIVA 606
PIDD+VEG+TGNLF+ +LKPYF+EAYR G FKV+ETD + +CIVA
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVA 184
Query: 607 XD 612
D
Sbjct: 185 PD 186
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/57 (68%), Positives = 44/57 (77%)
Frame = +2
Query: 86 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 256
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLL+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 67
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 TVIHCDGEPIKREEEE 661
T I CDGEPIKRE+EE
Sbjct: 187 TEIFCDGEPIKREDEE 202
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 97.9 bits (233), Expect = 6e-21
Identities = 44/110 (40%), Positives = 66/110 (60%)
Frame = +1
Query: 253 QGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPI 432
+G+RR+E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 70 RGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPF 129
Query: 433 DDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETD 582
DDSVEG++G+LFE YLKPYFM+A R G FKV++T+
Sbjct: 130 DDSVEGISGDLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTE 179
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Frame = +2
Query: 107 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLRANAAR 271
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V LR R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 272 K 274
+
Sbjct: 76 E 76
>07_03_0500 -
18798893-18799893,18801616-18801701,18801742-18801805,
18802640-18802853
Length = 454
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 155 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARKPFAS 286
++EEA+ DN +A S+ + + G TV+ N R+ FA+
Sbjct: 377 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFAA 420
>07_03_0501 - 18820554-18821548,18821960-18822182
Length = 405
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 155 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARKPFAS 286
++EEA+ DN +A S+ + + G TV+ N R+ F +
Sbjct: 328 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFVA 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,579,624
Number of Sequences: 37544
Number of extensions: 383317
Number of successful extensions: 949
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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