Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060626.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         86   2e-17
SB_50866| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/51 (76%), Positives = 48/51 (94%)
 Frame = +2

Query: 104 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 256
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL++
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIK 55



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +1

Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 375
           L +GK+RK+TVCIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +2

Query: 614 TVIHCDGEPIKREEEEGS 667
           TVIHC+GEP+KREEEE S
Sbjct: 134 TVIHCEGEPVKREEEEES 151



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 541 GACAPSSFKVVETDXSPFCIVAXD 612
           G      FKV+ETD SP+CIVA D
Sbjct: 110 GGMRAVEFKVIETDPSPYCIVAPD 133



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 522 DTFMVRGGMRAVEFQ 566
           D F+VRGGMRAVEF+
Sbjct: 104 DMFLVRGGMRAVEFK 118


>SB_50866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 557 RVSKWSKQXHHHFASWLLITVIHCDGEPIKREEEEGS 667
           R+++ S + H     W ++T   CD    KREEE  +
Sbjct: 21  RLARNSMEKHEETCEWKIVTCEFCDVPYPKREEENAA 57


>SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 557 RVSKWSKQXHHHFASWLLITVIHCDGEPIKREEE 658
           R+++ S + H     W ++T   CD    KREEE
Sbjct: 455 RLARNSMEKHEETCEWKIVTCEFCDVPYPKREEE 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,435,279
Number of Sequences: 59808
Number of extensions: 441304
Number of successful extensions: 1157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)