Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060626.seq
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   134   7e-32
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   124   4e-29
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   124   4e-29
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   7.1  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  134 bits (323), Expect = 7e-32
 Identities = 61/122 (50%), Positives = 83/122 (68%)
 Frame = +1

Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 426
           + +GK+RKE+V I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 427 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETDXSPFCIVA 606
           PIDD++EGLTGNLF+V+LKPYF+EAYR            A     FKVVET+ +P CIV+
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVS 183

Query: 607 XD 612
            D
Sbjct: 184 PD 185



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 35/63 (55%), Positives = 49/63 (77%)
 Frame = +2

Query: 95  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARK 274
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+L+    ++
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 275 PFA 283
             A
Sbjct: 73  SVA 75



 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 614 TVIHCDGEPIKREEEEGS 667
           T+IH +G+PIKREEEE S
Sbjct: 186 TMIHYEGDPIKREEEEES 203


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  124 bits (300), Expect = 4e-29
 Identities = 62/122 (50%), Positives = 81/122 (66%)
 Frame = +1

Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 426
           + +GK+R+ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 427 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETDXSPFCIVA 606
           PIDD++EGLTGNLF+V+L+PYF +AYR            A     FKVVETD +P CIVA
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVA 182

Query: 607 XD 612
            D
Sbjct: 183 PD 184



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = +2

Query: 95  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARK 274
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+L+    R+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 614 TVIHCDGEPIKREEEE 661
           TVIH +G+PIKREEEE
Sbjct: 185 TVIHYEGDPIKREEEE 200


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  124 bits (300), Expect = 4e-29
 Identities = 62/122 (50%), Positives = 81/122 (66%)
 Frame = +1

Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 426
           + +GK+R+ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 427 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETDXSPFCIVA 606
           PIDD++EGLTGNLF+V+L+PYF +AYR            A     FKVVETD +P CIVA
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVA 182

Query: 607 XD 612
            D
Sbjct: 183 PD 184



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = +2

Query: 95  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARK 274
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+L+    R+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 614 TVIHCDGEPIKREEEE 661
           TVIH +G+PIKREEEE
Sbjct: 185 TVIHYEGDPIKREEEE 200


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
           protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 109 IIRAFIICHFIQNLLLESKNYYNFY 35
           ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8   LLLAFVVCLTLFNVLLWSKSNYGFY 32


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 74  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 223
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 74  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 223
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,149
Number of Sequences: 27780
Number of extensions: 323604
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)