Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060626.seq
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 137 5e-33
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 137 5e-33
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 132 2e-31
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.93
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.2
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At2g23360.1 68415.m02790 transport protein-related contains Pfam... 29 3.8
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 28 6.6
At5g10520.1 68418.m01218 protein kinase family protein contains ... 27 8.7
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 27 8.7
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 137 bits (332), Expect = 5e-33
Identities = 63/122 (51%), Positives = 80/122 (65%)
Frame = +1
Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 426
L +GK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 427 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETDXSPFCIVA 606
P+DD+VEG+TGNLF+ YLKPYF+EAYR G FKV+ETD + +C+VA
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181
Query: 607 XD 612
D
Sbjct: 182 PD 183
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = +2
Query: 86 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 256
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L++
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIK 64
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 614 TVIHCDGEPIKREEEE 661
T I C+GEP+KRE+EE
Sbjct: 184 TEIFCEGEPVKREDEE 199
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 137 bits (332), Expect = 5e-33
Identities = 63/122 (51%), Positives = 80/122 (65%)
Frame = +1
Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 426
L +GK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 427 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETDXSPFCIVA 606
P+DD+VEG+TGNLF+ YLKPYF+EAYR G FKV+ETD + +C+VA
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181
Query: 607 XD 612
D
Sbjct: 182 PD 183
Score = 81.8 bits (193), Expect = 4e-16
Identities = 37/57 (64%), Positives = 48/57 (84%)
Frame = +2
Query: 86 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 256
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L++
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIK 64
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 614 TVIHCDGEPIKREEEE 661
T I C+GEP+KRE+EE
Sbjct: 184 TEIFCEGEPVKREDEE 199
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 132 bits (319), Expect = 2e-31
Identities = 59/122 (48%), Positives = 79/122 (64%)
Frame = +1
Query: 247 LAQGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 426
L +GK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 427 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTPSWSAGACAPSSFKVVETDXSPFCIVA 606
P+DD++EG++GN+F+ YLKPYF+EAYR G FKV+ETD + +C+VA
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVA 182
Query: 607 XD 612
D
Sbjct: 183 PD 184
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/58 (56%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = +2
Query: 86 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 256
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L++
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIK 65
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 614 TVIHCDGEPIKREEEE 661
T I C+GEPIKRE+EE
Sbjct: 185 TEIFCEGEPIKREDEE 200
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 238 TTEELKLLHFGL*KCHD*VVIAD 170
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 393 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 298
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 1280
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 554 RRVSKWSKQXHHHFASWLLITVIHC 628
RRVSKW+K+ + SW+ VI C
Sbjct: 190 RRVSKWNKEAEPYGQSWVAGDVIGC 214
>At2g23360.1 68415.m02790 transport protein-related contains Pfam
PF05911: Plant protein of unknown function (DUF869)
profile; weak similarity to Intracellular protein
transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 886
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 146 NRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARKPFASCSQTIIAL 310
+R VEE +D + + ++ K+E+ Q R + L AA + A C +TI+ L
Sbjct: 687 SRKTVEEEANDKTASASENELKLEEKQNMRTE---LEIAAASEKLAECQETILNL 738
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -1
Query: 442 LNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCK---RF 272
L++ CG H S D + I + H F+QH + + G R R+ C+ +
Sbjct: 262 LSYMCLQCGFAVHCSCVDLPQVININRHDHRISFTQHLGPGYLNCGVCR-RSVCQFNGAY 320
Query: 271 PCGVCP 254
C VCP
Sbjct: 321 SCLVCP 326
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 81 KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 224
++ +I L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 60 SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 191
S NK I +IIK IY P+++ A + S S SA TT S
Sbjct: 64 SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,644
Number of Sequences: 28952
Number of extensions: 303156
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -