Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060625.seq
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41421 Cluster: Uncharacterized 40.1 kDa protein in PK1...   159   4e-38
UniRef50_Q65359 Cluster: Uncharacterized 37.2 kDa protein; n=8; ...    75   2e-12
UniRef50_Q65360 Cluster: ORF 1173; n=1; Orgyia pseudotsugata sin...    38   0.23 
UniRef50_Q9YMT9 Cluster: LdOrf-35 peptide; n=1; Lymantria dispar...    34   2.8  
UniRef50_Q9X551 Cluster: Plasmid partition protein homolog ParB;...    33   6.5  
UniRef50_A3TQX4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_Q22648 Cluster: Putative uncharacterized protein; n=2; ...    33   8.6  

>UniRef50_P41421 Cluster: Uncharacterized 40.1 kDa protein in
           PK1-LEF1 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 40.1 kDa
           protein in PK1-LEF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 340

 Score =  159 bits (387), Expect = 4e-38
 Identities = 90/145 (62%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
 Frame = +1

Query: 256 KSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCL 435
           KSLSHWFST ET GIDDNVR+VLEQIDAVVPVSVRVQ G QIFSLNNFEREISQDML CL
Sbjct: 79  KSLSHWFSTSETMGIDDNVREVLEQIDAVVPVSVRVQNGWQIFSLNNFEREISQDMLDCL 138

Query: 436 QIILGRFEHFMRNGKLLHIANVFNLIATLSDGGTINFV**LMCTE*CIEACPPNWCSFVG 615
           QIILGRFE+FMRNGKLL IANVFN    +       F            + P      + 
Sbjct: 139 QIILGRFEYFMRNGKLLRIANVFNPNNDVVGWWYNKFCVVTYVHRIMYRSVPAELVPRLS 198

Query: 616 SG-EKIYSFEQSDYGWIRLHVDESY 687
              +K     +SDY   RLHVDESY
Sbjct: 199 EAVKKFIRLRKSDYD-DRLHVDESY 222



 Score =  118 bits (285), Expect = 1e-25
 Identities = 54/56 (96%), Positives = 55/56 (98%)
 Frame = +3

Query: 24  MSLAAKLIIYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMR 191
           MSLAAKLIIYNYYAKYNEVHDVYGESYHH+RIVQEYLSESYVN MSCIERDVTAMR
Sbjct: 1   MSLAAKLIIYNYYAKYNEVHDVYGESYHHYRIVQEYLSESYVNGMSCIERDVTAMR 56



 Score = 72.1 bits (169), Expect = 1e-11
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = +3

Query: 507 PNSDAVGWWYNKFCVITYVHRIMHRSVPAELV 602
           PN+D VGWWYNKFCV+TYVHRIM+RSVPAELV
Sbjct: 163 PNNDVVGWWYNKFCVVTYVHRIMYRSVPAELV 194



 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +2

Query: 191 RLKIGSCTFDEAVKMIDAGDSTKA 262
           RLK GSCTFDEAVKMIDAGDS K+
Sbjct: 57  RLKSGSCTFDEAVKMIDAGDSIKS 80


>UniRef50_Q65359 Cluster: Uncharacterized 37.2 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Uncharacterized 37.2 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 331

 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 30/56 (53%), Positives = 42/56 (75%)
 Frame = +3

Query: 24  MSLAAKLIIYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMR 191
           MSL++KL++Y YY  YN  HD YGESYH +RIV E+L+ +YV++ SC+ RD+   R
Sbjct: 1   MSLSSKLLVYAYYGSYNLPHDRYGESYHLYRIVHEHLTNTYVSNASCVRRDIATAR 56



 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 31/82 (37%), Positives = 47/82 (57%)
 Frame = +1

Query: 262 LSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCLQI 441
           LS WF  G+ TG+  ++++ L  ID   P++ RV     IF+L+    +I  D+   LQ 
Sbjct: 81  LSAWFRCGDATGLCADMQRALADIDRHAPLARRVGRRANIFALDAI-ADIPSDVTNNLQG 139

Query: 442 ILGRFEHFMRNGKLLHIANVFN 507
           I+GRF HF R   L  +A+VF+
Sbjct: 140 IIGRFMHFPRCSGLARVADVFD 161



 Score = 44.0 bits (99), Expect = 0.003
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +3

Query: 507 PNSDAVGWWYNKFCVITYVHRIMHRSVPA 593
           P+  A GWWY+KFCV+TY+H +   +VPA
Sbjct: 162 PDIRADGWWYHKFCVLTYMHLVACGAVPA 190


>UniRef50_Q65360 Cluster: ORF 1173; n=1; Orgyia pseudotsugata single
           capsid nuclopolyhedrovirus|Rep: ORF 1173 - Orgyia
           pseudotsugata single capsid nuclear polyhedrosis
           virus(OpSNPV)
          Length = 388

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = -1

Query: 507 VEHVGDVQQFSVSHEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSGLNAHADGNHR--V 334
           ++HVGD +Q + + ++ + A + LQ   +V RN   ++ +++  PS   A+A G  R  V
Sbjct: 231 IKHVGDPRQAAAARKVHEPANDALQVVCYVARNVGDRVQRKDVGPS---ANAPGKRRVAV 287

Query: 333 DLLQHFTDVIVDARRFAGAEP 271
           ++ Q    V   A   A AEP
Sbjct: 288 NVGQRALHVCAQAGGVAAAEP 308



 Score = 37.1 bits (82), Expect = 0.40
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 593 GGHASMHYSVHISYHTKFIVPPSDSVAIRL 504
           GGH +  Y VH+  H KF+VPP+    +R+
Sbjct: 202 GGHCTAGYKVHVRQHAKFVVPPTVGSDVRI 231


>UniRef50_Q9YMT9 Cluster: LdOrf-35 peptide; n=1; Lymantria dispar
           MNPV|Rep: LdOrf-35 peptide - Lymantria dispar
           multicapsid nuclear polyhedrosis virus (LdMNPV)
          Length = 359

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 21  NMSLAAKLIIYNYYAKYNEVHDVYGESYHHHRIVQEYL--SESYVNDMSCIERDVTAMR 191
           NMS+  KL + NY   ++     Y E Y   R   E+L     Y + MS +ER+V A R
Sbjct: 32  NMSIQGKLTVANYLCNFDARRGEYFELYRIARERLEHLRGEARYADGMSRLEREVAAAR 90



 Score = 34.3 bits (75), Expect = 2.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 516 DAVGWWYNKFCVITY 560
           D  GWWY+KFCV+ Y
Sbjct: 200 DRAGWWYDKFCVVAY 214


>UniRef50_Q9X551 Cluster: Plasmid partition protein homolog ParB;
           n=1; Corynebacterium glutamicum|Rep: Plasmid partition
           protein homolog ParB - Corynebacterium glutamicum
           (Brevibacterium flavum)
          Length = 265

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = +2

Query: 89  VWRVVSPSPYSSGIPIRIVRKRYVVHRAGRDRYARLKIGSCTFDEAVKMIDAGDSTKAFP 268
           +W  +   P +SG+ +  VR   V+  AGR+   R  + +   D  + +ID   S     
Sbjct: 82  IWPGLDVVP-TSGVTLGTVRDELVIAGAGREGRLREALATVAEDYDLILIDCAPSLDQLT 140

Query: 269 IGSAPAKRRASTITSVKCWSKS 334
           I    A      +T  K WS S
Sbjct: 141 INGLTAAHGVLVVTHSKQWSLS 162


>UniRef50_A3TQX4 Cluster: Putative uncharacterized protein; n=1;
           Janibacter sp. HTCC2649|Rep: Putative uncharacterized
           protein - Janibacter sp. HTCC2649
          Length = 308

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -1

Query: 447 QNNLQAAQHVLRNFSFKIVQREYLPSGLNAHA---DGNHRVDL 328
           +N LQAA ++L  ++F +VQ  Y P G+ A A   DG   VD+
Sbjct: 171 KNMLQAADNLLPRWNFSLVQGSYNPGGVGASAGTHDGGGVVDI 213


>UniRef50_Q22648 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 246

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 641 SNE*IFSPLPTNEHQFGGHASMHYSVHISYHTKFIVPPSDSV 516
           S+    S +PTN   F   AS  YSV  + H+ F +PP  SV
Sbjct: 2   SSSSFISSIPTNHTIFATPASKKYSVPNAEHSYFYIPPCKSV 43


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,926,865
Number of Sequences: 1657284
Number of extensions: 14206001
Number of successful extensions: 40539
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40522
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)