Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060625.seq
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 31 0.16
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 1.5
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz... 27 3.4
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.4
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 26 4.4
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 5.9
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 5.9
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 7.8
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 7.8
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 31.1 bits (67), Expect = 0.16
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +3
Query: 345 SRQRARSNRTADILFEQF*TRNFSRHVGLLANYFGPL*TFHEKRKTAA 488
S + A SN D LF TR+ V LLA + F+EKRKT A
Sbjct: 437 SIRTAVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLA 484
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Frame = -1
Query: 396 IVQREYLPSGLNAHADGNHRVDLLQHFT-------DVIVDARRFAGAEPMGKAFVESPAS 238
+VQ ++L S + AH ++ +D++ H+ D+ + AR+ + + + FV+ S
Sbjct: 207 LVQLDHLVSQILAHLRSDNILDIVLHYPNSLGAIEDLRLVARQKQQRQYLTETFVKDCTS 266
Query: 237 IILTASS 217
ILTASS
Sbjct: 267 SILTASS 273
>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
Alg11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 471
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 593 GGHASMHYSVHISYHTKFIVPPSDSVAIRLNTLAMCSSF 477
G HAS +YH + P + + +R+N + C+ F
Sbjct: 409 GFHASTISEYAEAYHKALTLSPQEQLEMRINARSACARF 447
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 608 NEHQFGGHASMHYSVHISYHTKFIVPPSDSV 516
+E++ + + ++ Y K +VPPSDS+
Sbjct: 215 SENELADYFCLPEESYVMYSNKLVVPPSDSI 245
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 36 AKLIIYNYYAKYNEVHDVYGESYH 107
+KLIIYN ++ +H +G++ H
Sbjct: 40 SKLIIYNKVCQFGRIHIFHGKNRH 63
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +3
Query: 3 ARGLTDNMSLAAKLIIYNYYAKYNEVHD---VYGESYHHHRIVQEYLSESYVNDMSCIER 173
A G D + A + Y+ Y VH YG + + YLS+ V + +E+
Sbjct: 1547 ATGTIDCIQGAMDFLTCTYF--YRRVHQNPVYYGADGDDQKSIDTYLSKLVVTAFNELEK 1604
Query: 174 DVTAMRV*RSAVAPLT 221
RV AP T
Sbjct: 1605 SACIYRVNEETYAPTT 1620
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 566 VHISYHTKFIVPPSDSVAIRLNTLAMCSSFPFLMKCSKR 450
+ +SY KFI P +A LN + SS + SKR
Sbjct: 552 ISLSYDGKFISPGIKDIASLLNVRKLISSPAIIQLVSKR 590
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 301 DDNVRKVLEQIDAVVPVSV-RVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHFMRNG 477
D + K+ I+ SV R F+ NN +Q++L C++I+LG+ E
Sbjct: 85 DSEINKITHIINFAAESSVDRSFIDPLYFTKNNILS--TQNLLECVRILLGKKEELRNRL 142
Query: 478 KLLHIA 495
+H++
Sbjct: 143 NFVHVS 148
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 80 ARRVWRVVSPSPYSSGIPIRIVRKRYVVHRAGRDRYAR 193
A R W +P+P S +P + +V+ + RD+Y R
Sbjct: 84 ANRYW---NPNPLSHPLPTNALSDEHVMEKYIRDKYER 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,960
Number of Sequences: 5004
Number of extensions: 60238
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -