Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060625.seq
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 32 0.49
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 31 0.65
09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342... 30 2.0
05_07_0012 + 27041475-27042476 30 2.0
09_02_0384 - 8294914-8297817 29 3.5
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 29 3.5
08_02_0894 + 22346027-22347925 28 6.0
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 28 8.0
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 28 8.0
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 131 PIRIVRKRYVVHRAGRDRYARLKIGSCTFDEAVKMIDAGDSTKA 262
P R V+KR + H+ R +K +DE VK+ DAG A
Sbjct: 6 PHRKVKKRRLSHKTARRGKFLVKADDAVYDELVKLADAGKDADA 49
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 527 SDSVAIRLNTLAMCSSFPFLMKCSKRP 447
SD + RLN ++CSS+ +M C+K+P
Sbjct: 222 SDQLNSRLNFFSLCSSYRDIMHCNKKP 248
>09_06_0245 -
21833622-21833901,21833988-21834059,21834152-21834231,
21834366-21835109,21835212-21835547
Length = 503
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 581 SMHYSVHIS-YHTKFIVPPSDSVAIRLNTLAMCSSFP 474
S H +H+S H + IVPPSD A R + LA ++ P
Sbjct: 56 SFHRILHLSALHREGIVPPSDVDAFRADMLATLAAAP 92
>05_07_0012 + 27041475-27042476
Length = 333
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 39 KLIIYNYYAKYNEVHDVYGESYHH 110
K+I+YN K+ EV D + ++Y H
Sbjct: 210 KMIVYNIATKFREVSDYFRQNYQH 233
>09_02_0384 - 8294914-8297817
Length = 967
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 563 HISYHTKFIVPPSDSVAIRLNTLAMCSSFPFLMKCSKRPKIICKQPNMS*EISRSKLFKE 384
H+ I PP++S ++ +M+ KR K+ C QP+ + E+ + +E
Sbjct: 259 HVDLLEVGIPPPNESKIQKVVFATRSEEICCVMEADKRIKLECLQPDEAWELFKYSATEE 318
Query: 383 NIC 375
IC
Sbjct: 319 TIC 321
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 9 GLTDNMSLAAKLIIYNYYAKYNEVHDVYGESY 104
G+TD+ LA + + +YA ++VH V G++Y
Sbjct: 400 GVTDDDCLAHLDLAFKFYALTDDVHGVLGQTY 431
>08_02_0894 + 22346027-22347925
Length = 632
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 277 STGETTGIDDN-VRKVLEQIDAVVPVSVRVQTGRQIFSLNNFER---EISQDMLGCLQII 444
S G ++GI + +R+ +A + RVQ+G + E IS+ ++ +
Sbjct: 525 SGGFSSGISKSALRERFRSFNAAFEEAHRVQSGWCVPDTQLREELRISISEKLVPAYRSF 584
Query: 445 LGRFEHFMRNGK 480
LGRF H + NGK
Sbjct: 585 LGRFRHHIENGK 596
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Frame = +2
Query: 92 WRVVSPSPYSSGIPIR---IVRKRYVVHRAGRDRYARLKIGSCTFDEAVKMIDAGDSTKA 262
W ++ P S PIR ++ +V AGR R + GS + VKM + G +
Sbjct: 578 WIAMTLFPRSDLRPIRGDELIIMFAMVENAGRRNMTRNEQGSSSSSTPVKMYEVGWA--- 634
Query: 263 FPIGSAPAKRRASTIT-SVKCWSKST--RW 343
P G AP +A + V WS ++ RW
Sbjct: 635 -PTGDAPGWTQAPRHSIGVSTWSTASEDRW 663
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1
Query: 468 HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 298
H + A NL + N F+ + EY+P+G L A H++G ++ L+ D+++D
Sbjct: 846 HVLRMARHRNLIKILNTCSNLDFRALVLEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 904
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,920,879
Number of Sequences: 37544
Number of extensions: 401633
Number of successful extensions: 1062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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