Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060625.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      31   1.2  
SB_1879| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    29   3.5  
SB_4335| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.2  
SB_13709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 608 NEHQFGGHASMHYSVHISYHTKFIVPPSDSVAIRLNTLAMCSS 480
           + H    H+S HY    S   K ++PPS ++ +R   LA  SS
Sbjct: 223 SHHHHHHHSSSHYKSSSSSSLKPLIPPSPTLGLRDKHLASSSS 265


>SB_1879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 640 QTNKFFHRFRQTSTNSAGTL--RCIILCT*VITQNLL 536
           Q   FF    + +TNS  TL  RCIILC   + QN L
Sbjct: 10  QNKSFFENAGRDTTNSTVTLPQRCIILCIRDVQQNRL 46


>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1038

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 545 LCDNLCAQNNASKRARRIGARLSEAVKKFIRLSKVIMDGFV 667
           LCD +  Q+   KR +++ A L E  +     S+V  DGFV
Sbjct: 615 LCDPIAFQSQEDKRQQQLAALLDEEDEPENEESEVFEDGFV 655


>SB_4335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 948

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 379 IFSLNNFEREISQDMLGCLQIILGRFEHFMRNGKLLHIANVFNLIATLSD 528
           +   N+  + I +     L  ++ +F H + NGK+LH   + +L+ TLS+
Sbjct: 236 LIKFNHLHKRIRRVADKYLSELVDKFPHLLWNGKVLHF--ILDLLQTLSE 283


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 525  GWWYNKFCVITYVHRIMHRSVPAELVLVCRKR*KN 629
            G WYN F  + Y  + +H  +P     +C K  KN
Sbjct: 1246 GKWYNAFRALVYHMKTVHDCLPPTTCDLCGKEFKN 1280


>SB_13709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 172 GT*PLCAFEDRQLHL*RSGQDDRRGRFHKSLSHWF-STGETTGIDDNV 312
           GT PLCA      ++ RSG  D R      LS W  S     G  DN+
Sbjct: 318 GTYPLCAVGAISTYIIRSGFQDGRPLTRAKLSSWLRSIVAAAGFPDNL 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,106,121
Number of Sequences: 59808
Number of extensions: 481850
Number of successful extensions: 1369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)