Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060625.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-13|CAA97340.2|  246|Caenorhabditis elegans Hypothetical p...    33   0.25 
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    31   0.58 
AF099917-9|AAC68787.1|  445|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z73098-13|CAA97340.2|  246|Caenorhabditis elegans Hypothetical
           protein T21C9.13 protein.
          Length = 246

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 641 SNE*IFSPLPTNEHQFGGHASMHYSVHISYHTKFIVPPSDSV 516
           S+    S +PTN   F   AS  YSV  + H+ F +PP  SV
Sbjct: 2   SSSSFISSIPTNHTIFATPASKKYSVPNAEHSYFYIPPCKSV 43


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 581 SMHYSVHISYHTKFIVPPSDSVAIRLNTLA 492
           S HY   I+Y T  ++PPSD +A+   TLA
Sbjct: 134 SWHYLFIIAYLTSTLIPPSDHLAVYNETLA 163


>AF099917-9|AAC68787.1|  445|Caenorhabditis elegans Hypothetical
           protein F54D10.9 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 507 PNSDAVGWWYNK-FCVITYVHRIMHRSVP 590
           P +D   WWYNK F V TY +++  R  P
Sbjct: 307 PAADIGRWWYNKPFNVQTYFNKVTCRRAP 335


>Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical
           protein C36B1.9 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 277 STGETTGID-DNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCLQIILGR 453
           +T E  GI     RK+ EQ+ A VP++ ++       SL    +   QD        + +
Sbjct: 100 NTSEEFGIKCPECRKINEQVPATVPINFQLMQILTTLSLVKVLQTPPQDQ------EIPK 153

Query: 454 FEHFMRNGKLLHIANVFNL 510
           +E+F R G  + IA++ NL
Sbjct: 154 YENFERLGTEIPIADLVNL 172


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 411 NFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVD 298
           N   K+++   L +G++ + D NH  +L Q   DVI +
Sbjct: 503 NVQAKLLKVHVLVNGVSRNPDANHTKELFQLLEDVITE 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,174
Number of Sequences: 27780
Number of extensions: 348721
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)