Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060625.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19120.1 68416.m02428 expressed protein                             31   0.95 
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    30   1.7  
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea...    30   1.7  
At2g04840.1 68415.m00497 F-box family protein similar to F-box p...    29   2.2  
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam...    29   3.8  
At4g17030.1 68417.m02569 expansin-related identical to SWISS-PRO...    28   6.7  
At2g46460.1 68415.m05782 hypothetical protein                          28   6.7  

>At3g19120.1 68416.m02428 expressed protein
          Length = 446

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 536 VPPSDSVAIRLNTLAM-CSSFPFLMKCSKRPKIICKQPNMS*EISRSKLFKENICRPV*T 360
           +P   +VA+ L+ LA  CS+     + S  P +I K  NM   +  +KL+ E I  PV  
Sbjct: 146 LPADYAVAMVLSRLAHGCSAKTLASRYSLDPYLISKITNMVTRLLATKLYPEFIKIPVGK 205

Query: 359 RTLTGTT 339
           R L  TT
Sbjct: 206 RRLIETT 212


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 48  IYNYYAKYNEVHDVYGESYHH-HRIVQEYLSESYVNDMSCIERDVT 182
           ++ +YA+  + H   G+ Y   +++V E     YV D SCI +D++
Sbjct: 377 VHIFYAE-GKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDIS 421


>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 353

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = +1

Query: 199 DRQLHL*RSGQDDRRGRFHKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRVQTGRQ 378
           D  LHL R   D    R  K  +H  S      IDD  R V    D  + ++  V+TG Q
Sbjct: 27  DGHLHLYRYDSDSSLVRERKVRAHKESCRAVRFIDDGQRIVTASADCSI-LATDVETGAQ 85

Query: 379 IFSLNN 396
           +  L N
Sbjct: 86  VAHLEN 91


>At2g04840.1 68415.m00497 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 389

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 599 QFGGHASMHYSVHISYHTKFIVPPSDSVAIRLN 501
           QFG HA     VH   +TK I+PPS +  + ++
Sbjct: 61  QFGKHARTSLHVHGDSYTKVILPPSGNCLLMVD 93


>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1423

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
 Frame = -1

Query: 471  SHEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSGLNAHADGN-HRVDLLQHFTDVIVDA 295
            SHE+  A +++     HV   FS   V  +   + +  H D N    + +Q   D+ +D+
Sbjct: 1228 SHEILAAKRDHAARPLHVRNPFSPPEVSSDSATTSIKGHPDSNISGSEAIQRSDDITIDS 1287

Query: 294  RRFAGAEPMGKAFVESPASIILTASSKVQLPIFKRA*RSRPALCTTYRLRTILIGIPELY 115
                     G   +++      +A+SK +   F R    R  L      R   I  P + 
Sbjct: 1288 TVTDKRRGKGPLLMDTDQKTDDSATSKSR---FSRKLTERQILSGKTVPRKHCIVSPSVS 1344

Query: 114  GDGD 103
             DGD
Sbjct: 1345 EDGD 1348


>At4g17030.1 68417.m02569 expansin-related identical to
           SWISS-PROT:O23547 expansin-related protein 1 precursor
           (At-EXPR1)[Arabidopsis thaliana]; related to expansins,
           http://www.bio.psu.edu/expansins/
          Length = 250

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 60  YAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIE 170
           YA YN V+ ++ +SY+ H +    L    VND+  +E
Sbjct: 146 YAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVE 182


>At2g46460.1 68415.m05782 hypothetical protein 
          Length = 160

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 197 KIGSCTFDEAVKMIDAGDSTKAFPIGSAPAKRRASTITSVKCWSKSTR--WF 346
           K G    DE+ + + AG +T      +  ++ +A  IT   CWS   R  WF
Sbjct: 26  KAGWIIRDESGQFVSAGQATGNHTSNALESEFQALLITMQSCWSHGHRKIWF 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,018
Number of Sequences: 28952
Number of extensions: 314039
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)