Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060624.seq
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             109   3e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   9e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 73   3e-13
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.16 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.16 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.37 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   3.4  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               28   6.0  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)                      28   7.9  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  109 bits (261), Expect = 3e-24
 Identities = 49/80 (61%), Positives = 62/80 (77%)
 Frame = +2

Query: 260 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 439
           L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREH
Sbjct: 5   LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREH 64

Query: 440 ALLAFTLGVKQLIVGVNKMD 499
           A+L  +LGV QLIV +NK+D
Sbjct: 65  AILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  100 bits (240), Expect = 9e-22
 Identities = 43/77 (55%), Positives = 58/77 (75%)
 Frame = +2

Query: 269 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 448
           F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276

Query: 449 AFTLGVKQLIVGVNKMD 499
           A T GVK L++ VNKMD
Sbjct: 277 AKTAGVKHLVILVNKMD 293



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 19/47 (40%), Positives = 33/47 (70%)
 Frame = +3

Query: 117 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDL 257
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+ G T+++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEV 212



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +1

Query: 514 YSEPRFEEIKKEVSSYIKKIGYNP 585
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 33  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 179
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +2

Query: 257 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 355
           ALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 28  ALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +3

Query: 177 MGKGSFKYAWVLDKLKAERELGITIDL 257
           MGKGSFKYAWVLDKLKAERE GITID+
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDI 27


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +2

Query: 290 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 469
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 470 QLIVGVNKMD 499
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 24/65 (36%), Positives = 30/65 (46%)
 Frame = +3

Query: 57   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 236
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 237  LGITI 251
             GIT+
Sbjct: 1987 RGITV 1991


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 299 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 478
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 479 VGVNKMD 499
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 33  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 128
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 284 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 394
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 296 IIDAPGHRDFIKNMITGTSQADCAVLIV 379
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 290 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 394
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 48  THINIVVIGHVDSGKSTTTGHLIY 119
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +2

Query: 290 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 469
           +  +D PGH  F      G    D  +++VAA             QT+E    A   GV 
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191

Query: 470 QLIVGVNKMD 499
            +I  +NK+D
Sbjct: 192 PIIFAINKID 201


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 520 EPRFEEIKKEVSSYIKKIGYNPAAVRFRAHFLD 618
           EP F+E+KKE+S   K  G +    R  A+ LD
Sbjct: 354 EPTFQELKKEISVLEKTFGPHNKQFRVSANGLD 386


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 413 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTSR 568
           +K   T+ H +  +T   +       K  +T+ HT+ P   K     PHT++
Sbjct: 19  TKTHTTKPHNIKLYTTKPRTTKPHTTKPHTTKPHTIKPHTTKPHTTKPHTTK 70


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 454 HPRCQTAHRRSKQNGFH*TPYSEPRFEEIKKEVSSYIKKIGYN 582
           H   + + RR ++N       + P+FE++K + +S  KKI  N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151


>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 490

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 445 ARFHPRCQTAHRRSKQNGFH*TPYSEPRFEEIKK 546
           A F PR +  +R  ++N  H  PYS+   EE +K
Sbjct: 118 ADFAPRARQPNREHRENERHNRPYSQGYHEEERK 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,066,317
Number of Sequences: 59808
Number of extensions: 430865
Number of successful extensions: 1138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)