Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060624.seq
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 181 4e-46
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 181 4e-46
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 156 2e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 156 2e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 111 3e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 111 3e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 103 1e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 70 2e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 70 2e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 67 9e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 67 9e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 67 9e-12
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 40 0.002
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 36 0.026
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.061
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.11
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.14
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.14
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.25
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.75
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 31 0.75
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.75
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.3
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.3
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.0
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.2
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.2
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 181 bits (441), Expect = 4e-46
Identities = 89/139 (64%), Positives = 99/139 (71%)
Frame = +2
Query: 257 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 436
ALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 437 HALLAFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTSRRLATTQLLFAFVPIFW 616
HALLA TLGVKQLIV NKMDSTE + + +++ FVPI
Sbjct: 136 HALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISG 195
Query: 617 MARRQHVGASTKMPWFKGW 673
+ S+ MPWFKGW
Sbjct: 196 FNGDNMLEVSSNMPWFKGW 214
Score = 156 bits (378), Expect = 2e-38
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 212
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 213 DKLKAERELGITIDL 257
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 181 bits (441), Expect = 4e-46
Identities = 89/139 (64%), Positives = 99/139 (71%)
Frame = +2
Query: 257 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 436
ALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 437 HALLAFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTSRRLATTQLLFAFVPIFW 616
HALLA TLGVKQLIV NKMDSTE + + +++ FVPI
Sbjct: 136 HALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISG 195
Query: 617 MARRQHVGASTKMPWFKGW 673
+ S+ MPWFKGW
Sbjct: 196 FNGDNMLEVSSNMPWFKGW 214
Score = 156 bits (378), Expect = 2e-38
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 212
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 213 DKLKAERELGITIDL 257
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 156 bits (378), Expect = 2e-38
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 212
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 213 DKLKAERELGITIDL 257
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 149 bits (360), Expect = 2e-36
Identities = 68/74 (91%), Positives = 72/74 (97%)
Frame = +2
Query: 257 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 436
ALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTRE
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTRE 135
Query: 437 HALLAFTLGVKQLI 478
HALLA TLGVKQL+
Sbjct: 136 HALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 156 bits (378), Expect = 2e-38
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 212
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 213 DKLKAERELGITIDL 257
DKLKAERE GITID+
Sbjct: 61 DKLKAERERGITIDI 75
Score = 90.6 bits (215), Expect(2) = 3e-24
Identities = 39/42 (92%), Positives = 42/42 (100%)
Frame = +2
Query: 257 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 382
ALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +1
Query: 511 PYSEPRFEEIKKEVSSYIKKIGYNPAAVRF 600
P+SE RF EI EVS +IKKIGYNP AV F
Sbjct: 127 PFSEARFTEITNEVSGFIKKIGYNPKAVPF 156
Score = 39.1 bits (87), Expect(2) = 3e-24
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +2
Query: 473 LIVGVNKMDSTEHHTVSPDLRKSRRKYPHTSRRLATTQLLFAFVPIFWMARRQHVGASTK 652
L+V NKMDSTE + + +++ FVPI + S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 653 MPWFKGW 673
MPWFKGW
Sbjct: 174 MPWFKGW 180
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 212
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 213 DKLKAER 233
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 111 bits (268), Expect = 3e-25
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +2
Query: 269 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 448
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 243 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 302
Query: 449 AFTLGVKQLIVGVNKMDSTE 508
+LGV QLIV VNK+D+ +
Sbjct: 303 LRSLGVTQLIVAVNKLDTVD 322
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +3
Query: 42 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 221
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 222 KAERELGITIDL 257
+ ERE G+T+D+
Sbjct: 227 EEERERGVTMDI 238
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 111 bits (268), Expect = 3e-25
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +2
Query: 269 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 448
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 261 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 320
Query: 449 AFTLGVKQLIVGVNKMDSTE 508
+LGV QLIV VNK+D+ +
Sbjct: 321 LRSLGVTQLIVAVNKLDTVD 340
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +3
Query: 42 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 221
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 222 KAERELGITIDL 257
+ ERE G+T+D+
Sbjct: 245 EEERERGVTMDI 256
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 103 bits (247), Expect = 1e-22
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +2
Query: 269 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 448
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 449 AFTLGVKQLIVGVNKMD 499
T GVK L++ VNKMD
Sbjct: 242 VKTAGVKHLVILVNKMD 258
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/74 (48%), Positives = 53/74 (71%)
Frame = +3
Query: 36 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 215
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 216 KLKAERELGITIDL 257
ERE G T+++
Sbjct: 164 TNDEEREKGKTVEV 177
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/24 (37%), Positives = 20/24 (83%)
Frame = +1
Query: 514 YSEPRFEEIKKEVSSYIKKIGYNP 585
+ E RF+EI+ +++ +++K+G+NP
Sbjct: 264 WEEERFKEIEGKLTPFLRKLGFNP 287
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +2
Query: 302 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 481
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 482 GVNKMDSTE 508
+NK D E
Sbjct: 167 FINKADLVE 175
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 45 KTHINIVVIGHVDSGKSTTT 104
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +2
Query: 302 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 481
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 482 GVNKMDSTE 508
+NK D E
Sbjct: 167 FINKADLVE 175
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 45 KTHINIVVIGHVDSGKSTTT 104
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 67.3 bits (157), Expect = 9e-12
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +2
Query: 248 NRFALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 427
N F L ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G Q
Sbjct: 101 NAFHL-EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------Q 152
Query: 428 TREHALLAFTLGV--KQLIVGVNKMD 499
TREH LLA +GV ++V +NK+D
Sbjct: 153 TREHLLLARQVGVPLDNIVVFMNKVD 178
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 39 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 209
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 210 LDKLKAER 233
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 67.3 bits (157), Expect = 9e-12
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +2
Query: 248 NRFALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 427
N F L ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G Q
Sbjct: 102 NAFHL-EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------Q 153
Query: 428 TREHALLAFTLGV--KQLIVGVNKMD 499
TREH LLA +GV ++V +NK+D
Sbjct: 154 TREHLLLARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 39 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 209
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 210 LDKLKAER 233
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 67.3 bits (157), Expect = 9e-12
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +2
Query: 248 NRFALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 427
N F L ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G Q
Sbjct: 102 NAFHL-EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------Q 153
Query: 428 TREHALLAFTLGV--KQLIVGVNKMD 499
TREH LLA +GV ++V +NK+D
Sbjct: 154 TREHLLLARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 39 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 209
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 210 LDKLKAER 233
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +2
Query: 290 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 469
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 470 QLIVGVNKMDSTEHHTVSPDLRKSRR 547
++I+ +NK D E +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 54 INIVVIGHVDSGKSTTT 104
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/70 (40%), Positives = 33/70 (47%)
Frame = +2
Query: 290 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 469
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 470 QLIVGVNKMD 499
QL+V VNK+D
Sbjct: 258 QLVVAVNKID 267
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 35.9 bits (79), Expect = 0.026
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +3
Query: 57 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 236
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 237 LGITI 251
GIT+
Sbjct: 74 RGITV 78
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.061
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 284 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 463
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 464 VKQLIVGVNKMD 499
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 33.1 bits (72), Expect = 0.19
Identities = 34/123 (27%), Positives = 55/123 (44%)
Frame = +3
Query: 57 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 236
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 237 LGITIDLLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIALCSS*LPVPVNSKLVSL 416
GIT+ + + + + L L+DT S E R +A+C L + ++ V
Sbjct: 86 RGITVKAQTAALRHRGYL---LNLIDTP-GHVDFSAEVSRSLAVCDGILLLVAANQGVQA 141
Query: 417 RTV 425
+T+
Sbjct: 142 QTI 144
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +2
Query: 287 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 466
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 467 KQLIVGVNKMD 499
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 57 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 236
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 237 LGITI 251
GITI
Sbjct: 96 RGITI 100
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +2
Query: 290 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 469
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 470 QLIVGVNKMD 499
I VNKMD
Sbjct: 166 PFICFVNKMD 175
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 492 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 364
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 128
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 284 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 394
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 33 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 128
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 284 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 394
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 9 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 119
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.1 bits (67), Expect = 0.75
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +2
Query: 296 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 475
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 476 IVGVNKMDSTEHHTVSP 526
++ +NK+D + +P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 9 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 119
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 275 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 394
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 275 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 394
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 135 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 236
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 135 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 236
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 54 INIVVIGHVDSGKSTTT 104
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 57 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 236
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
Query: 237 LGI 245
L +
Sbjct: 1692 LAM 1694
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 290 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 385
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 290 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 379
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 290 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 379
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -3
Query: 475 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 317
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 316 VSRSINDGNI 287
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,651,510
Number of Sequences: 27780
Number of extensions: 325962
Number of successful extensions: 1043
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -