Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060623.seq
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.0  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   7.1  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 500 FIRTQTKSPCSLWSSHFT 447
           F+   + +P  LW+SH T
Sbjct: 425 FVARNSDTPIILWTSHLT 442


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 282 YRSSRGHHEHPDTVPP 329
           Y SS+ HH H    PP
Sbjct: 48  YASSQHHHHHLQARPP 63


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 251 TAGRSWRLCFSSVYNDWTTLRIRSPSRCG 165
           T GR+W +   S  N    L I  P+  G
Sbjct: 299 TFGRAWAMDDESDINGTPPLHISGPAEAG 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,782
Number of Sequences: 336
Number of extensions: 3369
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)