Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060623.seq
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   3.3  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   4.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.7  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   7.7  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 259 LHNIDRINTE--VHGVIMNIPIPFPLPE 336
           LH + ++N +  VHGV++ +P+P  L E
Sbjct: 111 LHELKKLNDDHTVHGVLVQLPLPKHLNE 138


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 513 RPFSVYKNAN*VAMFTLELPLYFHCHLRIRLQDRQ 409
           + FSV KN   + MF   LP Y+H H+ I   D +
Sbjct: 221 KQFSVDKNQ--LKMFVHYLPSYYHLHVHILHVDHE 253


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 174 TLWTVASLDPQSLKNLASALAKSTAAVMKNNIFVNKMRFG 55
           T W V   DP  LK  A+ + +   +++ +NI  + +  G
Sbjct: 300 TRWVVDKADPNFLKPKAAMILEKILSILSSNIIQSDLLRG 339


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 270 RSHKYRSSRGHHEHPDTVP 326
           RS  YRS R H+++ DT P
Sbjct: 336 RSDSYRSKREHYDNRDTGP 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,543
Number of Sequences: 5004
Number of extensions: 53913
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)