Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060623.seq
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   4.5  
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913...    28   6.0  
12_02_0139 - 14277389-14279119                                         28   7.9  
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    28   7.9  

>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 262 HNIDRINTEVHGVIMNIPIPFPLPESDACKDNGL 363
           H++D  + E H ++ +IP   PL   +AC  N L
Sbjct: 585 HSLDTPDGEKHILLKDIPSTIPLDLKNACSQNSL 618


>04_03_0434 +
           15889712-15889797,15890086-15890287,15891184-15891323,
           15891420-15891559,15891762-15891913,15892773-15892902,
           15892990-15893141
          Length = 333

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 397 YKATLPILKSYPKVTVEVKWELQSEHGDL 483
           +KATL +L SY     E KWE ++   DL
Sbjct: 174 FKATLELLVSYKDQVAESKWENEAAAEDL 202


>12_02_0139 - 14277389-14279119
          Length = 576

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 219 RETQTPRSACSLTTAQHRSHKYRSSRGHHEHPDTVPPA 332
           R+ ++ RS  S  T  HR+ + R +  HH  P ++P A
Sbjct: 22  RQPKSKRSHISPATTAHRNLQTRLAHHHHATPASLPMA 59


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 191 EESSSHCILKRNTDATIGLQFNHCTTSIA*IQK 289
           ++ +SH  L +N + T+G Q +   T IA +QK
Sbjct: 760 KQKASHKKLLQNAEKTVGAQLSDAETKIAEVQK 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,137,189
Number of Sequences: 37544
Number of extensions: 381642
Number of successful extensions: 1061
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)