Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060623.seq
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31) 52 6e-07
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 29 2.6
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 29 4.6
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07) 29 4.6
SB_23878| Best HMM Match : Big_2 (HMM E-Value=0.65) 29 4.6
SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8) 28 6.1
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 28 6.1
>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
Length = 167
Score = 51.6 bits (118), Expect = 6e-07
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +1
Query: 256 PLHNIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPK 435
P + EV G+I + +PFPL + C+++G+ CP+ G A + + YP
Sbjct: 64 PNELVSSATIEVFGIIGGVQVPFPLKNPNVCENHGVKCPINAGDSATLDLNIYVSNLYPS 123
Query: 436 VTVEVKWELQSEHGDLV 486
+ + +K+EL+ LV
Sbjct: 124 LKLIIKFELKGGDNKLV 140
>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +1
Query: 256 PLHNIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPK 435
P ++ R H +I +P+P P+P SDAC+ GL+CP+ G + +K I +P
Sbjct: 64 PHEDLKRAKLSAHAIIDKLPLPLPIP-SDACQGYGLSCPVDSGVKSMFKIHQAIESEFPV 122
Query: 436 VTVEVK 453
+ +K
Sbjct: 123 GNLTLK 128
>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 274 RINTEVHGVIM--NIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVE 447
RI+ V+ V+ N + P+ S N + C +K + + P+ + V VE
Sbjct: 395 RIDPLVNDVLQWTNASLGRPVDVSQTSNGNAVACQVKAINMTVRELVKPMFSACADVCVE 454
Query: 448 VKWELQSEHGDLV 486
V WE +SEH LV
Sbjct: 455 VSWE-ESEHQCLV 466
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = +1
Query: 325 PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP 432
PLP + C D NG TC GT ++ + LP+ K P
Sbjct: 372 PLPNAVCCDDGVHCCPNGYTCNSSSGTCSEGDSVLPLFKKTP 413
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 255 TTAQHRSHKYRSSRGHHEHPDTV 323
T+ QH H +SR HHEH T+
Sbjct: 157 TSLQHHEHITTTSRTHHEHITTI 179
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 255 TTAQHRSHKYRSSRGHHEHPDTV 323
T+ QH H +SR HHEH T+
Sbjct: 90 TSLQHHEHITTTSRTHHEHITTI 112
>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
Length = 599
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 140 DCGSKLATVHNVTVSGCEESSSHCILKRNT-DATIGLQFNHCTTSIA*IQKFTGSS*TSR 316
D LA +H VT G H I K NT AT+ F + T + + ++ GS +R
Sbjct: 365 DTSIVLAWLHGVTQMGGTVGQDHAIRKCNTRSATLPRSFRNRTHATSRLRMSAGSDADTR 424
Query: 317 YRSPCRSL 340
RS+
Sbjct: 425 KNLRARSM 432
>SB_23878| Best HMM Match : Big_2 (HMM E-Value=0.65)
Length = 1060
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = -2
Query: 300 DPVNFCIYAID-VVQWLNCRPIVASVFLFSIQ*LDDSSHPLTVTLWTVASLD---PQSLK 133
DPVNF + A+D W + RP V +V + D+++ P A + QS K
Sbjct: 44 DPVNFTLKAVDGCYSWSSNRPDVVTVEPLYLDFDDENAKPYGKQCSRSAIVTVQRRQSEK 103
Query: 132 NLASALAKS--TAAVMKNNIFVNKM 64
+A +A+ T +++ ++FV K+
Sbjct: 104 QMAEVIAEEEVTGLLLECDVFVAKI 128
>SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)
Length = 171
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 355 NGLTCPLKEGTLADYKATLPILKSYPKVTVEV 450
N + +KEGTL D++ATLP Y + VE+
Sbjct: 53 NKMYVAVKEGTLTDFRATLP--SHYLGINVEL 82
>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
Length = 340
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 355 NGLTCPLKEGTLADYKATLPILKSYPKVTVEV 450
N + +KEGTL D++ATLP Y + VE+
Sbjct: 53 NKMYVAVKEGTLTDFRATLP--SHYLGINVEL 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,109,466
Number of Sequences: 59808
Number of extensions: 434784
Number of successful extensions: 1068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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