Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060623.seq
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical p...    27   9.4  
AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
 Frame = +2

Query: 56  PNLILLTKMLFFITAAVLLASAEA-KFFKDCG---SKL--ATVHNVTVSGCEESSSHCIL 217
           P+L ++T     I    L AS ++ K  K  G   SKL  + +++ TVSG E +S + I 
Sbjct: 516 PSLSIITSPKALIGEKCLTASNKSSKIDKSLGMIDSKLTKSPMYSATVSGKEATSGNRIA 575

Query: 218 KRNTDATIGLQFNHCT 265
           ++ T    GL+ +HCT
Sbjct: 576 RKLTPGLDGLKSSHCT 591


>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 167 HNVTVSGCEESSSHCILKRNTDA--TIGLQF 253
           HN T+SGCE +SS   LK + D+  T G++F
Sbjct: 625 HNSTISGCESNSSVATLKMSIDSNCTTGIEF 655


>U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical
           protein B0280.10 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 274 RINTEVHGVIMNIPIPFPLPESDACKD 354
           RI+ E +GV + IP+     E D C+D
Sbjct: 258 RISIETYGVFLTIPLELIKTELDICED 284


>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 480 VAMFTLELPLYFHCHLRIRLQDR---QCCFI 397
           ++     LP+YFHC+  IR Q R   + CFI
Sbjct: 412 ISSTAFRLPVYFHCNGDIRAQIRHFAKACFI 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,445,635
Number of Sequences: 27780
Number of extensions: 317528
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)