Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060623.seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45210.1 68416.m04879 expressed protein contains Pfam profile...    28   6.6  
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ...    28   6.6  
At2g46710.1 68415.m05828 rac GTPase activating protein, putative...    28   6.6  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    28   6.6  
At1g22800.1 68414.m02848 expressed protein similar to Biotin syn...    28   6.6  
At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing ...    27   8.7  
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family...    27   8.7  

>At3g45210.1 68416.m04879 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 148

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 192 SHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNN 82
           S P TVT  TVAS  P +++N +  L K     ++N+
Sbjct: 60  SSPATVTTTTVASSLPMNVQNWSKILGKENRKSIEND 96


>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 708

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 298 PRELLYLCDRCCAVVKLQ 245
           PR+  Y C++CC  V LQ
Sbjct: 616 PRDWFYACNKCCITVHLQ 633


>At2g46710.1 68415.m05828 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 2 [Lotus
           japonicus] GI:3695061; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 455

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 362 SPLSLHASDSGRGNGIGMFMMTP*TSVFMRSML 264
           +PLS HAS SG G+G G   +    +  +R  L
Sbjct: 54  TPLSSHASRSGNGSGSGQLTVVDLLAAVLRKSL 86


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 298 PRELLYLCDRCCAVVKLQADRGVCVSLQ 215
           PRE  Y C++CC  + L+   G  V ++
Sbjct: 488 PREWFYSCNKCCITIHLECIFGSSVYIK 515


>At1g22800.1 68414.m02848 expressed protein similar to Biotin
           synthesis protein bioC. {Serratia marcescens}
           (SP:P36571); ESTs gb|Z34075, gb|Z34835 and gb|AA404888
           come from this gene
          Length = 355

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 62  LILLTKMLFFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATI 241
           L+   K+L   TA    A  ++ F  + G+  AT   + ++G  E SSH   KR   AT+
Sbjct: 283 LLERNKILNRETAVATAAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKRRGSATV 342


>At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing
           protein similar to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain
          Length = 658

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 25/88 (28%), Positives = 37/88 (42%)
 Frame = +2

Query: 122 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFNHCTTSIA*IQKFTGS 301
           E++FFK   S  +   N   S  +ES+SH  +    + T GL  + C    A ++     
Sbjct: 70  ESRFFKTHNSSSSDPTNSVESQEDESTSHEEVPAEGEDTKGLNIDDCMREEASVETNLDD 129

Query: 302 S*TSRYRSPCRSLTRARTTG*PAPSRRE 385
           S      SPC   T   +    AP+R E
Sbjct: 130 S----VASPCGGNTTDLSLVPYAPTRGE 153


>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 267 HRSHKYRSSRGHHEHPDTVPP 329
           HR  K+R  R HH+HP   PP
Sbjct: 71  HRRKKWRQRR-HHKHPPPPPP 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,002
Number of Sequences: 28952
Number of extensions: 293903
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)