Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060622.seq
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 73 2e-13
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 62 4e-10
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 61 6e-10
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 54 7e-08
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 47 1e-05
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 42 3e-04
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 42 3e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 42 3e-04
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 41 0.001
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 41 0.001
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 36 0.020
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 36 0.036
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 34 0.082
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.33
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.33
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 32 0.33
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 32 0.44
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 31 0.58
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 31 0.58
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 31 0.58
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.58
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.58
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 31 0.58
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 31 0.58
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.77
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 31 0.77
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 31 0.77
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 31 0.77
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 31 0.77
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 31 1.0
AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine re... 31 1.0
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 29 2.3
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 29 2.3
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 29 2.3
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 29 2.3
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 29 3.1
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 28 5.4
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 28 5.4
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 28 7.1
U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical pr... 28 7.1
U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein... 28 7.1
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 7.1
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 27 9.4
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 27 9.4
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 27 9.4
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 27 9.4
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 27 9.4
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/135 (30%), Positives = 69/135 (51%)
Frame = +1
Query: 256 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYV 435
W + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA P +
Sbjct: 82 WSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQI 141
Query: 436 QQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYFKRVPAKRWPTSCQPLCT*TTNRLFRRG 615
+ + +++PT IQ+ WPIAM R ++ K K L T +RG
Sbjct: 142 HE-LLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRG 200
Query: 616 DGPIALVLAPNQRVS 660
+GP LVL P + ++
Sbjct: 201 EGPAVLVLLPTRELA 215
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/132 (25%), Positives = 61/132 (46%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ Q FNKNFY+ H + + +V +N + V G++ P+ F +F + +
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LAYFKRVPAKRWPTSCQPLCT*TTNRLFRRGDGP 624
++ Y++PTPIQA P A+ R L K K + + G+GP
Sbjct: 280 IRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGP 339
Query: 625 IALVLAPNQRVS 660
+A+++ P + ++
Sbjct: 340 VAVIVVPTRELA 351
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 61.3 bits (142), Expect = 6e-10
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 346 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*L 525
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + R +
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 526 AYFKRVPAKRWPTSCQPLCT*TTN-----RLFRRGDGPIALVLAPNQRVS 660
+ K PL T+ R R GP A+++AP + ++
Sbjct: 343 GVAETGSGKT-AAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELA 391
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 54.4 bits (125), Expect = 7e-08
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = +1
Query: 244 ASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEAN 420
A V + F KNFY + + + EV+ YR + +TV G++ PI+ + +
Sbjct: 251 AQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCG 310
Query: 421 FPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYFKRVPAKRWPTSCQPLCT*TTNR 600
+ +K Y +PT IQAQ P M R + K K
Sbjct: 311 VNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQP 370
Query: 601 LFRRGDGPIALVLAPNQRVS 660
GDGPIA++LAP + ++
Sbjct: 371 ELEEGDGPIAVILAPTRELA 390
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAIVHINNQPPISE 611
G++++G+ +TGSGKTLA++LP HI +QP + E
Sbjct: 341 GRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEE 374
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQ 596
+ NG ++ S G++ +GV QTGSGKTLA++LPA++HI+ Q
Sbjct: 100 RKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ 149
Score = 34.3 bits (75), Expect = 0.082
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +1
Query: 271 LQPFNKNFYDPHPTVLKRSPYEVEE-YRNNHEVTV------SGVEVHNPIQYFEEANFPD 429
++P ++ Y SP +++E Y N + V S V++ P+ FE+A +
Sbjct: 33 MKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAFGSN 92
Query: 430 YVQQG-VKTMGYKEPTPIQAQGWPIAM 507
G ++ G+++P+PIQ+Q WP+ +
Sbjct: 93 ASIMGEIRKNGFEKPSPIQSQMWPLLL 119
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 355 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
N V VSG V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 177
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 513 KNLVGVLQTGSGKTLAYILPAIVHI 587
++L+ QTGSGKT A++LP I HI
Sbjct: 177 RDLMSCAQTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 355 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
N V VSG V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 161
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 513 KNLVGVLQTGSGKTLAYILPAIVHI 587
++L+ QTGSGKT A++LP I HI
Sbjct: 161 RDLMSCAQTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 355 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
N V VSG V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 158
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 513 KNLVGVLQTGSGKTLAYILPAIVHI 587
++L+ QTGSGKT A++LP I HI
Sbjct: 158 RDLMSCAQTGSGKTAAFLLPIIQHI 182
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 498
V +G +V PI F + + +++++ +KT GY PTP+Q P
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIP 198
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAIVHINNQPP 602
G++L+ QTGSGKT A+++P + I P
Sbjct: 203 GRDLMSCAQTGSGKTAAFLVPLVNAILQDGP 233
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQPPISER*WSD 626
KDN + +A S G ++VG +TGSGKTLA ++P + + WS
Sbjct: 92 KDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL------EALWRAKWSP 145
Query: 627 CFGLGA 644
+GLGA
Sbjct: 146 DYGLGA 151
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQP 599
C+ G + + L + GK+++G+ +TGSGKT A+ +P + + + P
Sbjct: 59 CQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 110
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIV 581
K G+ A + + G++++G+ TGSGKT+ ++LP ++
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAI 578
GK+++ +TGSGKTLA++LPAI
Sbjct: 105 GKDVLASAKTGSGKTLAFLLPAI 127
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F EAN + +Q+ V GY + TPIQ P+
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPL 374
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHI 587
G +T L + G +++ QTGSGKT A++LP + +
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F EAN + +Q+ V GY + TPIQ P+
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPL 374
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHI 587
G +T L + G +++ QTGSGKT A++LP + +
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F EAN + +Q+ V GY + TPIQ P+
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPL 374
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHI 587
G +T L + G +++ QTGSGKT A++LP + +
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAI 578
G ++ + S ++ + KN++G +TGSGKT A+++P +
Sbjct: 108 GWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQPPISER*WSDCF 632
G +T L + G +++ QTGSGKT A++LP + + ++ ++ C+
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F EAN + +++ V GY + TPIQ P+
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPL 585
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQPPISER*WSDCF 632
G +T L + G +++ QTGSGKT A++LP + + ++ ++ C+
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F EAN + +++ V GY + TPIQ P+
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPL 585
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILP 572
GK+++ QTGSGKT A++LP
Sbjct: 335 GKDILACAQTGSGKTAAFLLP 355
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F +++ P +++ V+ GY TPIQ P+
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPL 331
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAIVHI 587
G ++V TGSGKTLA+++P ++ +
Sbjct: 773 GNDVVACAHTGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAIVHI 587
G ++V TGSGKTLA+++P ++ +
Sbjct: 773 GNDVVACAHTGSGKTLAFLIPFVIKL 798
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILP 572
GK+++ QTGSGKT A++LP
Sbjct: 335 GKDILACAQTGSGKTAAFLLP 355
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F +++ P +++ V+ GY TPIQ P+
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPL 331
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQPPISER*WSDCF 632
G +T L + G +++ QTGSGKT A++LP + + ++ ++ C+
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F EAN + +++ V GY + TPIQ P+
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPL 585
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 108 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 224
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAI 578
GK++V + +TGSGKT A+++P +
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPML 83
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAI 578
GK++V + +TGSGKT A+++P +
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPML 83
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAIVHINNQP 599
G +++G +TG+GKTLA+ +P + ++ P
Sbjct: 126 GSDILGCARTGTGKTLAFAIPILQKLSVDP 155
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAIVHINNQP 599
G +++G +TG+GKTLA+ +P + ++ P
Sbjct: 126 GSDILGCARTGTGKTLAFAIPILQKLSVDP 155
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 537 TGSGKTLAYILPAIVHINNQP 599
TGSGKT+ Y+LP + + ++P
Sbjct: 165 TGSGKTICYVLPVLAAVGSKP 185
>AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine
receptor, class t protein53 protein.
Length = 318
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = -3
Query: 537 FEVRQLNSFQHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLV 358
F+VR+ F+ S+RP + +R+ F+ L L+H+ I + +M +L
Sbjct: 217 FKVRR--QFRKSFRPKRTARQRQIFLQAFLLCLIHLSASILYV-----VMQFIEVPKFLT 269
Query: 357 IISVLFDFIW*SFENCRMWIIKVF 286
IIS ++W + C + I +F
Sbjct: 270 IIS---QYLWQLAQGCPVIIYLIF 290
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 477 YSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQ 596
Y + + GKN V V TGSGKT I A+ HI +
Sbjct: 374 YQEELVQPALEGKNCVIVAPTGSGKTEVAIYAALKHIEER 413
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 441 RCKDNGLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHI 587
R +N +++ + +N++ TGSGKTLA+ LP I I
Sbjct: 140 RLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEI 188
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 531 LQTGSGKTLAYILPAIVH 584
L TG+GK+L Y LPA+VH
Sbjct: 201 LPTGAGKSLCYQLPAVVH 218
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQPP 602
G ++ A + GK+++ Q+G+GKT + + + I+++ P
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDP 96
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 424 PDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
P+ V + ++ MG+ EPT IQ+ P A+ +R
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDR 193
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 513 KNLVGVLQTGSGKTLAYILPAIVHI 587
++++G +TGSGKTLA+ +P + +
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLVARL 218
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQPP 602
G ++ A + GK+++ Q+G+GKT + + + I+++ P
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDP 96
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
FE+ N + + GY +PTPIQ P+A+
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVAL 183
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVLQTGSGKTLAYILPAIVHINNQP 599
C G + + + GK++ TG+GKT A++LP + + +P
Sbjct: 163 CSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRP 214
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 513 KNLVGVLQTGSGKTLAYILPAIVHI 587
++++G +TGSGKTLA+ +P + +
Sbjct: 27 QDVLGAAETGSGKTLAFGIPLVARL 51
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVLQT 539
C+D G Q SR+AD Y GK +G+++T
Sbjct: 191 CEDCGAQLNITDHESRIADHYNGKMHIGMVET 222
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 537 TGSGKTLAYILPAIVHINN 593
TGSGKTLA++LP + I N
Sbjct: 55 TGSGKTLAFVLPMMRMIQN 73
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 160 RIIAEFVASSKFGTTVSTAIIPV 92
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 160 RIIAEFVASSKFGTTVSTAIIPV 92
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = -3
Query: 513 FQHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFD 337
++ +YR N + + + Y + +I + F + + ++NLN T +L I+++F+
Sbjct: 28 YRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIFN 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = -3
Query: 513 FQHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFD 337
++ +YR N + + + Y + +I + F + + ++NLN T +L I+++F+
Sbjct: 28 YRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIFN 86
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 317 RTVGCGS*KFLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCHRCQ 168
RTV + L+ G+ E S L + D QR++ S +IL + C R Q
Sbjct: 78 RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQ 127
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 317 RTVGCGS*KFLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCHRCQ 168
RTV + L+ G+ E S L + D QR++ S +IL + C R Q
Sbjct: 78 RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQ 127
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 317 RTVGCGS*KFLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCHRCQ 168
RTV + L+ G+ E S L + D QR++ S +IL + C R Q
Sbjct: 78 RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQ 127
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 317 RTVGCGS*KFLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCHRCQ 168
RTV + L+ G+ E S L + D QR++ S +IL + C R Q
Sbjct: 78 RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQ 127
>U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical
protein ZC317.1 protein.
Length = 340
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAI 578
G+ LV TG GKT A+++PAI
Sbjct: 30 GRGLVVEAPTGIGKTYAFLIPAI 52
>U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein 14
protein.
Length = 528
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 510 GKNLVGVLQTGSGKTLAYILPAI 578
G+ LV TG GKT A+++PAI
Sbjct: 130 GRGLVVEAPTGIGKTYAFLIPAI 152
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 236 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 135
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 492 LADSYVGKNLVGVLQTGSGKTLAYILPAIV 581
+ + +G + ++ TG+GK+L Y LPA++
Sbjct: 256 ILSTLMGHDTFVLMPTGAGKSLCYQLPAVI 285
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 459
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 459
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 256 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI 399
+ + L+ FN+ Y+ PT L + +E+YR + + G+ NP+
Sbjct: 165 YSNALLKSFNE-IYNDKPTALIENLKTIEKYRKGNVLNQMGLRHRNPL 211
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 513 KNLVGVLQTGSGKTLAYILPAIV 581
++ V +L TG GK+L Y LPA++
Sbjct: 102 EDAVVILSTGGGKSLCYQLPALL 124
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 513 KNLVGVLQTGSGKTLAYILPAIV 581
++ V +L TG GK+L Y LPA++
Sbjct: 125 EDAVVILSTGGGKSLCYQLPALL 147
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 492 LADSYVGKNLVGVLQTGSGKTLAYILPAIV 581
+ + +G + ++ TG+GK+L Y LPA++
Sbjct: 256 ILSTLMGHDTFVLMPTGAGKSLCYQLPAVI 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,601
Number of Sequences: 27780
Number of extensions: 301693
Number of successful extensions: 953
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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