Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060621.seq
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YTV7 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q7YYL8 Cluster: GTPase activator protein, possible; n=3...    33   6.5  

>UniRef50_Q4YTV7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 136

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 229 LC-CNNVTISLYYYYFNYVDTRNFCT*IFSLTM 324
           LC CNN T SLYYY+F     RNFC  IF + M
Sbjct: 45  LCTCNNYTYSLYYYFF-----RNFCN-IFIIRM 71


>UniRef50_Q7YYL8 Cluster: GTPase activator protein, possible; n=3;
           Cryptosporidium|Rep: GTPase activator protein, possible
           - Cryptosporidium parvum
          Length = 414

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = -2

Query: 380 FAKKAKTNFL*INWVQDSDIVNEKIYVQKFRVST*LK***YSDIVTLLQQSSTNTKSPTL 201
           F  K   + L I+ + D D +NEK+  Q  R S       + +I  +  Q+S N +SPT+
Sbjct: 125 FRWKIWNSLLQISSLDDEDKINEKVS-QSLRNSNF-----FLEIFNINDQNSPNFQSPTI 178

Query: 200 LFVLNNYY 177
            F+  NYY
Sbjct: 179 NFIYCNYY 186


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,423,087
Number of Sequences: 1657284
Number of extensions: 11885230
Number of successful extensions: 22049
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22040
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)