Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060621.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.4  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   5.4  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   5.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.1  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = +3

Query: 27  KMFK-PYPNIMPHFET 71
           +MF+ P PN+ PH+ T
Sbjct: 404 QMFEAPIPNVSPHYVT 419


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 238 NNVTISLYYYYFNYVDTRNFCT*IFSLTMSES*TQ 342
           NN+    +Y+ F ++  R  C  +F   +++  TQ
Sbjct: 315 NNLERIYFYWSFGFLIVRTVCLCLFGGKVNDESTQ 349


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 238 NNVTISLYYYYFNYVDTRNFCT*IFSLTMSES*TQ 342
           NN+    +Y+ F ++  R  C  +F   +++  TQ
Sbjct: 315 NNLERIYFYWSFGFLIVRTVCLCLFGGKVNDESTQ 349


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 125 CSSHFKYILIIYNTRICYNNY 187
           CSS    +    +T  CYNNY
Sbjct: 236 CSSSQPVLSTTNSTTNCYNNY 256


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 477 LVGRIQPIISIWYGREKILLYIFPCCLK 394
           ++G    I +  +G + I+L IF CCL+
Sbjct: 229 ILGDTVEIFNSLFGYQ-IILVIFDCCLE 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,510
Number of Sequences: 336
Number of extensions: 3685
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)