Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060621.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    29   0.83 
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    27   2.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   4.4  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   5.8  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   7.7  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 362 FWPF*QNKVLNFKQQGKIYNNIFSL 436
           +WP+ ++K+L F   G I+   FSL
Sbjct: 385 YWPYLEDKLLKFSDLGDIFEYFFSL 409


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 457 NHKYLVWQGENIIIYFPLLFKVKNLILLKRPKLIFYKL 344
           N+ Y +W+ + I+IY    +  +  I L R    +YK+
Sbjct: 63  NNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKV 100


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 314 EKIYVQKFRVST*LK***YSDIVTLLQQSST--NTKSPTLLFVLNNYYSRSSCCILLIYI 141
           E + V+K ++S  LK    SD+  +  +     N   P ++    +Y +  S CI+L Y 
Sbjct: 33  ETVAVKKVKLSKMLK----SDLSVIKMEIDLLKNLDHPNIVKYRGSYQTNDSLCIILEYC 88

Query: 140 *NGTNNSM 117
            NG+  S+
Sbjct: 89  ENGSLRSI 96


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 205 VGDFVLVELCCNNVTISLYYYYFNY 279
           +GDF+ +E   NNV  ++  ++F+Y
Sbjct: 512 IGDFLKIEFIQNNVIPTILDHFFDY 536


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 377 QNKVLNFKQQGKIYNNI 427
           QN++L FKQ  K+ NN+
Sbjct: 65  QNEILGFKQDVKLLNNV 81


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +3

Query: 279 RRYTKFLYVNFFIDYVRILNP-----VNL*KISFGLFSKIRFLTLNSKGKYIIIFSP 434
           R + K LY   F +++  + P     +++   S  L  K+ FL+ N   KY+  F P
Sbjct: 584 RMFHKELYFAIFNNFLFAIQPDSVLPLSMLSKSLNLDDKLPFLSNNENDKYVYEFDP 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,230
Number of Sequences: 5004
Number of extensions: 56656
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)