Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060621.seq
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z35599-2|CAD91629.2| 584|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z35599-1|CAA84659.2| 581|Caenorhabditis elegans Hypothetical pr... 29 4.1
U37429-16|AAA79341.1| 597|Caenorhabditis elegans Protein kinase... 29 4.1
AF025666-1|AAB88885.1| 597|Caenorhabditis elegans protein kinas... 29 4.1
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 27 9.4
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 9.4
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 9.4
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 27 9.4
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 9.4
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 9.4
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 9.4
>Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical
protein T21B4.14 protein.
Length = 426
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 5 TSLLFHMQNVQTLPKHHATF*DLNEFET*KFE*TLYFSLNCSSHFKYILIIYNTRICYNN 184
++ LF ++N ++H TF +F T + YF + S + Y L YNT ++
Sbjct: 50 SNFLFELENSTRYFRNHTTF----QFNT-----SHYFMQSSSPLYNYYLTFYNTNCSLDD 100
Query: 185 -YLIQITGLAILC 220
+L+ +GLA+ C
Sbjct: 101 RFLVSKSGLALTC 113
>Z35599-2|CAD91629.2| 584|Caenorhabditis elegans Hypothetical
protein F25F2.1b protein.
Length = 584
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 410 KIYNNIFSLPYQILMIG*ILPTNSSY 487
++ NN+ +LP QIL IG IL T S Y
Sbjct: 399 RLPNNLTNLPSQILDIGQILKTESPY 424
>Z35599-1|CAA84659.2| 581|Caenorhabditis elegans Hypothetical
protein F25F2.1a protein.
Length = 581
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 410 KIYNNIFSLPYQILMIG*ILPTNSSY 487
++ NN+ +LP QIL IG IL T S Y
Sbjct: 399 RLPNNLTNLPSQILDIGQILKTESPY 424
>U37429-16|AAA79341.1| 597|Caenorhabditis elegans Protein kinase c
protein 3 protein.
Length = 597
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 2 GTSLLFHMQNVQTLPKHHATF 64
G L+FHMQ + LP+ HA F
Sbjct: 336 GGDLMFHMQQQRKLPEEHARF 356
>AF025666-1|AAB88885.1| 597|Caenorhabditis elegans protein kinase
C3 protein.
Length = 597
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 2 GTSLLFHMQNVQTLPKHHATF 64
G L+FHMQ + LP+ HA F
Sbjct: 336 GGDLMFHMQQQRKLPEEHARF 356
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
protein R10E8.6 protein.
Length = 1696
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 95 ISKFQIHLSLKMWHDVWVRFEHFACGTINS 6
IS + +LK+ W F+HF+C TI S
Sbjct: 545 ISVAMCNTTLKLSSKSWENFKHFSCATIIS 574
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 157 YY*YIFEMGRTIQ*KIECSFKFLSFKF 77
Y Y+FE+G TI +EC K L + F
Sbjct: 432 YNFYLFEVGFTILFNVECIIKILCYGF 458
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 157 YY*YIFEMGRTIQ*KIECSFKFLSFKF 77
Y Y+FE+G TI +EC K L + F
Sbjct: 432 YNFYLFEVGFTILFNVECIIKILCYGF 458
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 157 YY*YIFEMGRTIQ*KIECSFKFLSFKF 77
Y Y+FE+G TI +EC K L + F
Sbjct: 490 YNFYLFEVGFTILFNVECIIKILCYGF 516
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 157 YY*YIFEMGRTIQ*KIECSFKFLSFKF 77
Y Y+FE+G TI +EC K L + F
Sbjct: 490 YNFYLFEVGFTILFNVECIIKILCYGF 516
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 157 YY*YIFEMGRTIQ*KIECSFKFLSFKF 77
Y Y+FE+G TI +EC K L + F
Sbjct: 536 YNFYLFEVGFTILFNVECIIKILCYGF 562
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 157 YY*YIFEMGRTIQ*KIECSFKFLSFKF 77
Y Y+FE+G TI +EC K L + F
Sbjct: 462 YNFYLFEVGFTILFNVECIIKILCYGF 488
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,530,900
Number of Sequences: 27780
Number of extensions: 296790
Number of successful extensions: 617
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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