Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060621.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.51 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   3.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   4.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.3  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 128 SSHFKYILIIYNTRICYNNYLIQITGLAI 214
           ++++KY    YN ++ Y NY+I I  + +
Sbjct: 326 NNNYKYNYNNYNKKLYYKNYIINIEQIPV 354


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 113 FSLNCSSHFKYILIIYNTRICYNNYLIQITGLAI 214
           +  N ++ + Y    YN ++ Y NY+I I  + +
Sbjct: 96  YKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPV 129


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 600 MGNKFGKLIVSKYLKPVNNGYF 535
           M N  GK     + KP+N+G++
Sbjct: 277 MSNDLGKTAEFDWNKPINSGFY 298


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 600 MGNKFGKLIVSKYLKPVNNGYF 535
           M N  GK     + KP+N+G++
Sbjct: 277 MSNDLGKTAEFDWNKPINSGFY 298


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 427 NIIIYFPLLFKVKNLILLKRPKL 359
           N ++Y   L K+ N +  KRP+L
Sbjct: 90  NSVVYIEQLTKLNNAVEEKRPEL 112


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 427 NIIIYFPLLFKVKNLILLKRPKL 359
           N ++Y   L K+ N +  KRP+L
Sbjct: 212 NSVVYIEQLTKLNNAVEEKRPEL 234


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 YNTRICYNNYLIQITGLAI 214
           YN ++ Y NY+I I  + +
Sbjct: 100 YNKKLYYKNYIINIEQIPV 118


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 YNTRICYNNYLIQITGLAI 214
           YN ++ Y NY+I I  + +
Sbjct: 341 YNKKLYYKNYIINIEQIPV 359


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 445 LVWQGENIIIYFPLLFKVKNLILLKRPKLIFYKLTG 338
           +VW G  +II       +   ++L+RPK    KLTG
Sbjct: 641 MVWAGFAMIIVASYTANLAAFLVLERPKT---KLTG 673


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 110 YFSLNCSSHFKY--ILIIYNTRICYNNYLIQITGLAIL 217
           Y +    SH +Y  +L+ ++ +    N+LIQ+ G  +L
Sbjct: 189 YSASTTLSHAEYSMLLVYFHLQRHMGNFLIQVYGPCVL 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,137
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)