Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060621.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30090.1 68417.m04279 expressed protein                             29   3.8  
At2g14060.1 68415.m01564 S-adenosyl-L-methionine:carboxyl methyl...    28   5.0  

>At4g30090.1 68417.m04279 expressed protein
          Length = 312

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 445 LVWQGENIIIYFPLLFKVKNLILLKRPK 362
           L W G   +I FPL+F +K L  +  PK
Sbjct: 260 LAWVGATALIGFPLIFIIKLLSAVSNPK 287


>At2g14060.1 68415.m01564 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 359

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 465 IQPIISIWYGREKILLYIFPCCLKLRTLFC*KGQN 361
           IQP++ I   RE +L   FP C+K+  L C  GQN
Sbjct: 24  IQPLV-IENVREMLLKNGFPGCIKVADLGCSTGQN 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,228,911
Number of Sequences: 28952
Number of extensions: 252787
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)