Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060619.seq
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   3.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.5  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 285 FGIEYCVVGVLATWFLAASPMRRSVSVNAT*DGVVL 178
           F   +C+VG+LA    + + +R+  SV A  +G+ L
Sbjct: 6   FIFAFCLVGILAVSEESINKLRKIESVCAEENGIDL 41


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 531 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 623
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 663 VQFRSPSTXFLSKTRKQSQQQWV 595
           V FRSPST  +S   +Q    W+
Sbjct: 336 VHFRSPSTHNMSPWVRQVFLNWM 358


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 77 PFCIFNQSCYLFLKQ 33
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,827
Number of Sequences: 438
Number of extensions: 5080
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)