Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060618.seq
(669 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 204 2e-51
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 157 2e-37
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 149 6e-35
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 148 1e-34
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 146 3e-34
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 146 4e-34
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 143 4e-33
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 142 7e-33
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 140 4e-32
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 139 5e-32
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 136 6e-31
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 135 1e-30
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 134 1e-30
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 63 7e-09
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 45 0.001
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 43 0.006
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 43 0.006
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 41 0.024
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 41 0.024
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 41 0.031
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 40 0.041
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 40 0.054
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 40 0.054
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 39 0.095
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 39 0.13
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 39 0.13
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 39 0.13
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 39 0.13
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 38 0.17
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 38 0.22
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 38 0.29
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 38 0.29
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 38 0.29
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 37 0.38
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 37 0.51
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 36 1.2
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 36 1.2
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 36 1.2
UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei... 36 1.2
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 36 1.2
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 35 1.5
UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Re... 35 2.0
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 34 3.6
UniRef50_Q6F4M8 Cluster: Oxygenase component of 4-NP monooxygena... 33 4.7
UniRef50_Q6BLI3 Cluster: Similar to ca|CA3554|IPF7770 Candida al... 33 8.2
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 204 bits (498), Expect = 2e-51
Identities = 118/210 (56%), Positives = 137/210 (65%), Gaps = 5/210 (2%)
Frame = +2
Query: 8 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 187
KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS
Sbjct: 1274 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 1333
Query: 188 DESLAHFCFHLYVEPINDIPIISSFSARPFR-*MYQSQ*VLTAFQQDSSCHPSERKSFGS 364
DE L F F P PF+ ++ L + Q S+ + ++ +
Sbjct: 1334 DEVLGTFLFSSLCRAYKRHP----NHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANAN 1389
Query: 365 RLAVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDSK 532
R + + Q ++N F P ++ ++L L F P ++YQRVFDSK
Sbjct: 1390 RSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSK 1449
Query: 533 DRPPNLFVYGGQTPYDLSRFASSHLKPLQI 622
DRPPNLFVYGGQTPYDLSRFASSHLKPLQI
Sbjct: 1450 DRPPNLFVYGGQTPYDLSRFASSHLKPLQI 1479
Score = 190 bits (463), Expect = 3e-47
Identities = 96/134 (71%), Positives = 101/134 (75%), Gaps = 4/134 (2%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF
Sbjct: 1357 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 1416
Query: 435 GPWKACQTLALMHDAIVLIFGPIKNISEFSTVKIVLPTCLCMEAK----LHTISLGLLRP 602
GPWKACQTLALMHDAIVLIFGPIK K P + L + L+P
Sbjct: 1417 GPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKP 1476
Query: 603 I*NHYKFHVCNDYS 644
+ + HVCNDYS
Sbjct: 1477 L----QIHVCNDYS 1486
Score = 54.0 bits (124), Expect = 3e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +1
Query: 193 ILGTFLFSSLCRAYKRHPNHKFLFSP 270
+LGTFLFSSLCRAYKRHPNHK F P
Sbjct: 1336 VLGTFLFSSLCRAYKRHPNHKVPFQP 1361
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 157 bits (382), Expect = 2e-37
Identities = 66/88 (75%), Positives = 78/88 (88%)
Frame = +3
Query: 258 PFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFG 437
PF PDL+ ECINLNE++QLS+KTQA I ANANRSDPDWR++AVRIF+KTQHK+NEGS+FG
Sbjct: 1388 PFDPDLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFG 1447
Query: 438 PWKACQTLALMHDAIVLIFGPIKNISEF 521
WKACQTLALMHDA+VL+ GP+K F
Sbjct: 1448 SWKACQTLALMHDAVVLLLGPVKKYQRF 1475
Score = 113 bits (273), Expect = 3e-24
Identities = 74/207 (35%), Positives = 108/207 (52%), Gaps = 5/207 (2%)
Frame = +2
Query: 8 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 187
+GE SNQFP +D P+E GAQT S++AP H+SK+DPTLL ASI KRLRFR S PY ++P
Sbjct: 1304 RGEMSNQFPHLDKPFELGAQTSSLLAPLHNSKHDPTLLPASIGKRLRFRHSEAPYVIAPR 1363
Query: 188 DESLAHFCFHLYVEPINDIPIISSFSARPF-R*MYQSQ*VLTAFQQDSSCHPSERKSFGS 364
DE L + + + P PF +Y L F Q SS + + +
Sbjct: 1364 DEILGSLLYEAWCRAYHRSP----RDVEPFDPDLYAECINLNEFAQLSSKTQATIMANAN 1419
Query: 365 RLAVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDSK 532
R + A Q ++N F ++ ++L L P ++YQR FD +
Sbjct: 1420 RSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRFFDQR 1479
Query: 533 DRPPNLFVYGGQTPYDLSRFASSHLKP 613
DRP L+V+ G TP++++ + +HL P
Sbjct: 1480 DRPSTLYVHAGHTPFEMADWCRAHLTP 1506
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 149 bits (361), Expect = 6e-35
Identities = 65/82 (79%), Positives = 73/82 (89%)
Frame = +3
Query: 261 FQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGP 440
F P LF ECINLNE++QLS+KTQA I NA RSDPDWR++AVRIFSKTQHK+NEGSIFG
Sbjct: 1568 FDPVLFAECINLNEFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGS 1627
Query: 441 WKACQTLALMHDAIVLIFGPIK 506
WKACQTLALMHDA+VLI GP+K
Sbjct: 1628 WKACQTLALMHDAVVLILGPVK 1649
Score = 97.5 bits (232), Expect = 3e-19
Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 5/205 (2%)
Frame = +2
Query: 8 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 187
+G+ SNQFP +D + AQ +S++A H K DPTLL ASI KRLRFRPS PY+++P
Sbjct: 1483 QGQLSNQFPHMDKEFHLAAQPMSLLAAIHQEKQDPTLLPASIQKRLRFRPSDRPYQITPK 1542
Query: 188 DESLAHFCFHLYVEPINDIPIISSFSARPFR*MYQSQ*V-LTAFQQDSSCHPSERKSFGS 364
DE L F + P F F + ++ + L F Q SS +
Sbjct: 1543 DEILGQLLFEGLCRAYHRSP----FHTEAFDPVLFAECINLNEFAQLSSKTQATIMGNAR 1598
Query: 365 RLAVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDSK 532
R + + Q ++N F ++ ++L L P ++YQRVFD +
Sbjct: 1599 RSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLALMHDAVVLILGPVKKYQRVFDQR 1658
Query: 533 DRPPNLFVYGGQTPYDLSRFASSHL 607
DRP +L+++ G TP +S + HL
Sbjct: 1659 DRPRHLYIHAGNTPSQMSNWCQQHL 1683
Score = 34.3 bits (75), Expect = 2.7
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = +1
Query: 193 ILGTFLFSSLCRAYKRHPNHKFLFSP 270
ILG LF LCRAY R P H F P
Sbjct: 1545 ILGQLLFEGLCRAYHRSPFHTEAFDP 1570
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 148 bits (359), Expect = 1e-34
Identities = 64/83 (77%), Positives = 75/83 (90%)
Frame = +3
Query: 258 PFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFG 437
PF LFVECI+LNE++QL++KTQAVI NA RSDPDWR++AVRIFSKTQHK+NEGSIFG
Sbjct: 1429 PFDEALFVECIDLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFG 1488
Query: 438 PWKACQTLALMHDAIVLIFGPIK 506
WKACQTLALMHDA+VL+ GP+K
Sbjct: 1489 AWKACQTLALMHDAVVLLLGPVK 1511
Score = 110 bits (265), Expect = 3e-23
Identities = 72/205 (35%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Frame = +2
Query: 14 EFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDE 193
+ SNQFP VD Y AQ ++++AP HDSK+DPTLL+ASI KRLRFRPS PYR+SP DE
Sbjct: 1347 QLSNQFPHVDKEYHLAAQPMTLLAPIHDSKHDPTLLAASIQKRLRFRPSASPYRISPRDE 1406
Query: 194 SLAHFCFHLYVEPINDIPIISSFSARPF-R*MYQSQ*VLTAFQQDSSCHPSERKSFGSRL 370
L + + P + PF ++ L F Q +S + R
Sbjct: 1407 LLGQLLYESLCRAYHRSPT----TTHPFDEALFVECIDLNEFAQLTSKTQAVIMGNARRS 1462
Query: 371 AVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDSKDR 538
+ + Q ++N F ++ ++L L P ++YQRVFD++DR
Sbjct: 1463 DPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVFDARDR 1522
Query: 539 PPNLFVYGGQTPYDLSRFASSHLKP 613
P +L+++ GQTP +S + +HL P
Sbjct: 1523 PAHLYIHAGQTPSSMSLWCQTHLTP 1547
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 146 bits (355), Expect = 3e-34
Identities = 70/134 (52%), Positives = 90/134 (67%), Gaps = 4/134 (2%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
+PF P LF ECI LNEY+QLS+KTQA I +NA+RSDPDWRYT VRIF+K+QHK+N+GSIF
Sbjct: 1377 IPFNPALFAECICLNEYAQLSSKTQATIVSNASRSDPDWRYTVVRIFAKSQHKVNDGSIF 1436
Query: 435 GPWKACQTLALMHDAIVLIFGPIKN----ISEFSTVKIVLPTCLCMEAKLHTISLGLLRP 602
G WKACQTLALMHD ++L GP+K I + + C ++L S L+
Sbjct: 1437 GSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKTPSELSAWSHSFLKG 1496
Query: 603 I*NHYKFHVCNDYS 644
++CNDY+
Sbjct: 1497 -----DAYICNDYT 1505
Score = 84.2 bits (199), Expect = 3e-15
Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 4/201 (1%)
Frame = +2
Query: 20 SNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDESL 199
S QFP++D PY Q S++A H DPTLL SI+KRLRFR S PY +P+D L
Sbjct: 1298 SQQFPYLDQPYTLSCQPSSLLAASHKPASDPTLLIFSISKRLRFRASSSPYAFTPNDLIL 1357
Query: 200 AHFCFHLYVEPINDIPIISSFSARPFR*MYQSQ*VLTAFQQDSSCHPSERKSFGSRLAVH 379
H + + + P S+ P ++ L + Q SS + S SR
Sbjct: 1358 GHLLYTNWCKAFGRCP-NSTIPFNPA--LFAECICLNEYAQLSSKTQATIVSNASRSDPD 1414
Query: 380 CCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDSKDRPPN 547
+ + A +Q ++N F ++ ++L L P ++YQR+ D DRP
Sbjct: 1415 WRYTVVRIFAKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDRPNF 1474
Query: 548 LFVYGGQTPYDLSRFASSHLK 610
++ + G+TP +LS ++ S LK
Sbjct: 1475 IYTHCGKTPSELSAWSHSFLK 1495
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 146 bits (354), Expect = 4e-34
Identities = 60/84 (71%), Positives = 75/84 (89%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
VPF P+LF ECI+LNEY+QLS+KTQ+ I ANA+RSDPDWR+T V+IF+K QHK+N+GSIF
Sbjct: 1451 VPFNPELFAECISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIF 1510
Query: 435 GPWKACQTLALMHDAIVLIFGPIK 506
G WKACQTLALMHD ++L+ GP+K
Sbjct: 1511 GSWKACQTLALMHDYVILVLGPVK 1534
Score = 95.5 bits (227), Expect = 1e-18
Identities = 70/205 (34%), Positives = 100/205 (48%), Gaps = 5/205 (2%)
Frame = +2
Query: 8 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 187
K + SNQFPW D P+ Q S+I+ KH +DPTLL ASI KRLRFRPS P++++
Sbjct: 1368 KDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDPTLLPASINKRLRFRPSDSPHQITAD 1427
Query: 188 DESLAHFCFHLYVEPINDIPIISSFSARPFR*MYQSQ*V-LTAFQQDSSCHPSERKSFGS 364
D L FH + P S PF ++ + L + Q SS S + S
Sbjct: 1428 DVVLGLQLFHSLCRAYSRQP----NSTVPFNPELFAECISLNEYAQLSSKTQSTIVANAS 1483
Query: 365 RLAVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDSK 532
R K A Q ++N F ++ ++L L P ++YQR+FD+
Sbjct: 1484 RSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLALMHDYVILVLGPVKKYQRIFDNA 1543
Query: 533 DRPPNLFVYGGQTPYDLSRFASSHL 607
DRPPN++ + G+TP L + HL
Sbjct: 1544 DRPPNIYSHCGKTPNQLRDWCQEHL 1568
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 193 ILGTFLFSSLCRAYKRHPNHKFLFSP 270
+LG LF SLCRAY R PN F+P
Sbjct: 1430 VLGLQLFHSLCRAYSRQPNSTVPFNP 1455
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 143 bits (346), Expect = 4e-33
Identities = 61/84 (72%), Positives = 75/84 (89%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
VPF +LF ECI LNE++QLS+KTQA+I AN +RSDPDWR++AVRIF+KTQHK+N+ SIF
Sbjct: 1460 VPFDENLFAECIALNEFAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAKTQHKVNDHSIF 1519
Query: 435 GPWKACQTLALMHDAIVLIFGPIK 506
G WKACQTLALMHDA+VL+ GP+K
Sbjct: 1520 GGWKACQTLALMHDAVVLLLGPVK 1543
Score = 69.7 bits (163), Expect = 6e-11
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
Frame = +2
Query: 113 TLLSASIAKRLRFRPSFLPYRLSPSDESLAHFCFHLYVEPINDIPIISSFSARPF-R*MY 289
T L ASI KRLRFRPS PYR++ DE L F + + P S PF ++
Sbjct: 1412 TFLPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTAMLRSPSASV----PFDENLF 1467
Query: 290 QSQ*VLTAFQQDSSCHPSERKSFGSRLAVHCCPHIFKNSA*NQRRLN----FRPLESMPD 457
L F Q SS + + R + A Q ++N F ++
Sbjct: 1468 AECIALNEFAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAKTQHKVNDHSIFGGWKACQT 1527
Query: 458 ISLDA*CHCLNFWPDQEYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKP 613
++L L P ++YQR+FD+ DRP N+FVY G TP +++ + ++LKP
Sbjct: 1528 LALMHDAVVLLLGPVKKYQRIFDAADRPANIFVYAGHTPSEMANWCRANLKP 1579
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 142 bits (344), Expect = 7e-33
Identities = 59/89 (66%), Positives = 74/89 (83%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
+PF P LF ECI +N+Y+QLS+KT+A I ANA RSDPDWRYT+V+IF+K+QHK+N+GSIF
Sbjct: 1350 IPFDPVLFAECICINDYAQLSSKTKATIVANAERSDPDWRYTSVKIFAKSQHKVNDGSIF 1409
Query: 435 GPWKACQTLALMHDAIVLIFGPIKNISEF 521
G WKACQTLALMHD ++L GP+K F
Sbjct: 1410 GNWKACQTLALMHDYVILTLGPVKKYQRF 1438
Score = 73.3 bits (172), Expect = 5e-12
Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 4/204 (1%)
Frame = +2
Query: 8 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 187
+ + S+QFP++D P+ Q S+IA H D TLL S+ KRLRFRPS PY +P+
Sbjct: 1267 RDDASSQFPYLDSPFLLSCQPSSLIAAIHKPATDSTLLPLSVNKRLRFRPSTSPYCFTPN 1326
Query: 188 DESLAHFCFHLYVEPINDIPIISSFSARPFR*MYQSQ*VLTAFQQDSSCHPSERKSFGSR 367
D L F N P S P ++ + + Q SS + + R
Sbjct: 1327 DFILGEHLFQSLCSVYNRHP-SESIPFDPV--LFAECICINDYAQLSSKTKATIVANAER 1383
Query: 368 LAVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDSKD 535
K A +Q ++N F ++ ++L L P ++YQR FD KD
Sbjct: 1384 SDPDWRYTSVKIFAKSQHKVNDGSIFGNWKACQTLALMHDYVILTLGPVKKYQRFFDQKD 1443
Query: 536 RPPNLFVYGGQTPYDLSRFASSHL 607
P +++ + G+TP DLS + ++L
Sbjct: 1444 CPAHIYKHCGKTPADLSIWCKTNL 1467
Score = 34.7 bits (76), Expect = 2.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 193 ILGTFLFSSLCRAYKRHPNHKFLFSP 270
ILG LF SLC Y RHP+ F P
Sbjct: 1329 ILGEHLFQSLCSVYNRHPSESIPFDP 1354
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 140 bits (338), Expect = 4e-32
Identities = 62/84 (73%), Positives = 71/84 (84%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
VPF LF ECIN+NE++Q SNKT++ I ANA+RSDPDWR TAV+IFSKTQHKINE SIF
Sbjct: 1384 VPFDELLFAECININEFAQSSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIF 1443
Query: 435 GPWKACQTLALMHDAIVLIFGPIK 506
G WKACQTLALMHD +VL GP+K
Sbjct: 1444 GSWKACQTLALMHDYVVLFLGPVK 1467
Score = 93.9 bits (223), Expect = 3e-18
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 6/207 (2%)
Frame = +2
Query: 8 KGEFSNQFP-WVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSP 184
+GEFS QFP ++ + AQ+ ++IA KHDSK DPTLL ASI KRL FRPS Y+LS
Sbjct: 1300 RGEFSAQFPILLNQDFSLSAQSSTLIAAKHDSKRDPTLLVASITKRLCFRPSDSSYQLSS 1359
Query: 185 SDESLAHFCFHLYVEPINDIPIISSFSARPFR*MYQSQ*V-LTAFQQDSSCHPSERKSFG 361
D+ L +H + N P + PF + ++ + + F Q S+ S +
Sbjct: 1360 KDQILGLTLYHSWCRAYNRHP----QAVVPFDELLFAECININEFAQSSNKTKSTIIANA 1415
Query: 362 SRLAVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDS 529
SR K + Q ++N F ++ ++L L P + YQR+FDS
Sbjct: 1416 SRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYVVLFLGPVKIYQRIFDS 1475
Query: 530 KDRPPNLFVYGGQTPYDLSRFASSHLK 610
++RP N++ + G +P ++S +A HL+
Sbjct: 1476 QERPANVYYHAGHSPLEMSEWAQKHLQ 1502
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 139 bits (337), Expect = 5e-32
Identities = 58/84 (69%), Positives = 74/84 (88%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
+PF LF+ECI +N+Y+QLS+KTQA I ANA+RSDPDWR+T V+IF+K+QHK+N+GSIF
Sbjct: 1354 LPFNEALFLECIAVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAKSQHKVNDGSIF 1413
Query: 435 GPWKACQTLALMHDAIVLIFGPIK 506
GPWKACQTLALMHD ++L GP+K
Sbjct: 1414 GPWKACQTLALMHDYVILTLGPVK 1437
Score = 97.1 bits (231), Expect = 3e-19
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%)
Frame = +2
Query: 8 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 187
K + S QFPW++L + QT S+I+ +H D TLL AS+ KRLRFRP+ PY+++PS
Sbjct: 1271 KDQTSQQFPWLNLDFHISCQTSSLISARHQPGSDSTLLPASLHKRLRFRPTAAPYQITPS 1330
Query: 188 DESLAHFCFHLYVEPINDIPIISSFSARPF-R*MYQSQ*VLTAFQQDSSCHPSERKSFGS 364
D L + + + + P + PF ++ + + Q SS + + S
Sbjct: 1331 DSFLGNCLYRSWCQVYRRDPNV----RLPFNEALFLECIAVNDYAQLSSKTQATIVANAS 1386
Query: 365 RLAVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDSK 532
R K A +Q ++N F P ++ ++L L P ++YQR+FD
Sbjct: 1387 RSDPDWRHTFVKIFAKSQHKVNDGSIFGPWKACQTLALMHDYVILTLGPVKKYQRLFDQL 1446
Query: 533 DRPPNLFVYGGQTPYDLSRFASSHLK 610
+RP +++ + G TP+DL R+ S HL+
Sbjct: 1447 ERPSHIYYHAGNTPHDLRRWCSKHLE 1472
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 136 bits (328), Expect = 6e-31
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +3
Query: 258 PFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFG 437
PF P LF ECI LN+Y+QLS+KTQA + AN +RSDPDWR+TAV+IF+K+QHK+N+ SIFG
Sbjct: 1482 PFNPALFAECIALNDYAQLSSKTQATLVANHSRSDPDWRHTAVKIFAKSQHKVNDASIFG 1541
Query: 438 PWKACQTLALMHDAIVLIFGPIK 506
WKACQTLALMHD ++L GP+K
Sbjct: 1542 NWKACQTLALMHDFVILSLGPVK 1564
Score = 88.6 bits (210), Expect = 1e-16
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 5/206 (2%)
Frame = +2
Query: 5 RKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSP 184
R+ + S QFPW D P+ Q S+IA KH DPTLL SI KRLRFR S P+ LS
Sbjct: 1397 RRDQTSAQFPWFDRPFSLSCQPSSLIAAKHSPSQDPTLLPFSIPKRLRFRKSDNPHVLSA 1456
Query: 185 SDESLAHFCFHLYVEPINDIPI-ISSFSARPFR*MYQSQ*VLTAFQQDSSCHPSERKSFG 361
D L + F + P + F+ ++ L + Q SS + +
Sbjct: 1457 IDVLLGNQLFFNLCKAYRRNPTHVGPFNPA----LFAECIALNDYAQLSSKTQATLVANH 1512
Query: 362 SRLAVHCCPHIFKNSA*NQRRLN----FRPLESMPDISLDA*CHCLNFWPDQEYQRVFDS 529
SR K A +Q ++N F ++ ++L L+ P ++YQR+FD+
Sbjct: 1513 SRSDPDWRHTAVKIFAKSQHKVNDASIFGNWKACQTLALMHDFVILSLGPVKKYQRIFDA 1572
Query: 530 KDRPPNLFVYGGQTPYDLSRFASSHL 607
DRPP+L+ + G++P DLS + +HL
Sbjct: 1573 LDRPPHLYTHCGKSPADLSAWCQTHL 1598
Score = 33.5 bits (73), Expect = 4.7
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 193 ILGTFLFSSLCRAYKRHPNHKFLFSP 270
+LG LF +LC+AY+R+P H F+P
Sbjct: 1460 LLGNQLFFNLCKAYRRNPTHVGPFNP 1485
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 135 bits (326), Expect = 1e-30
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
+PFQP+LF ECI +N+Y+QLS+KTQA I AN RSDPDWR TAVRIF+K QHK+N+ SIF
Sbjct: 1447 LPFQPELFSECICINDYAQLSSKTQATIVANHQRSDPDWRLTAVRIFAKAQHKVNDASIF 1506
Query: 435 GPWKACQTLALMHDAIVLIFGPIK 506
WKACQTLALMH I+L+ GP+K
Sbjct: 1507 SGWKACQTLALMHGYIILVLGPVK 1530
Score = 72.5 bits (170), Expect = 8e-12
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +2
Query: 20 SNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDESL 199
SNQFP++D P+E Q S++AP H DPTLL SI KRLRFR S PY ++PSD+ L
Sbjct: 1368 SNQFPYLDAPFELSCQPSSLLAPIHKPASDPTLLPGSIKKRLRFRASSSPYSITPSDQLL 1427
Query: 200 AHFCF 214
F
Sbjct: 1428 GQHLF 1432
Score = 50.8 bits (116), Expect = 3e-05
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = +2
Query: 497 PDQEYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHL 607
P ++YQR+FDSKDRPP+++ + G+TP LS++ +HL
Sbjct: 1528 PVKKYQRIFDSKDRPPHIYYHCGKTPSQLSQWCQTHL 1564
Score = 34.3 bits (75), Expect = 2.7
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 190 RILGTFLFSSLCRAYKRHPNHKFLFSP 270
++LG LFSSLC AY R+PN F P
Sbjct: 1425 QLLGQHLFSSLCLAYGRNPNSVLPFQP 1451
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 134 bits (325), Expect = 1e-30
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
VPF P LF CI N+++QL++KTQA IQANA RSDPDWR+T VRIFSKTQHK+NE S+F
Sbjct: 1562 VPFDPVLFASCIAENDFAQLTSKTQATIQANAFRSDPDWRHTFVRIFSKTQHKVNENSLF 1621
Query: 435 GPWKACQTLALMHDAIVLIFGPIK 506
WKACQTLALMHD ++L+ GP+K
Sbjct: 1622 TSWKACQTLALMHDYLILVLGPVK 1645
Score = 99.1 bits (236), Expect = 8e-20
Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Frame = +2
Query: 8 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 187
+ +SNQFP+++ P L+++AP H+ K DPTLL AS+AKRLRFR S PY ++
Sbjct: 1480 RNNWSNQFPFINRPDTVACNPLTLVAPTHNQKQDPTLLHASLAKRLRFRDSTAPYTITAK 1539
Query: 188 DESLAHFCFH----LYV---EPINDIPII--SSFSARPFR*M---YQSQ*VLTAFQQDSS 331
D++L + +H Y EP+ P++ S + F + Q+ AF+ D
Sbjct: 1540 DQALGYILYHSLQRAYCRSPEPVPFDPVLFASCIAENDFAQLTSKTQATIQANAFRSD-- 1597
Query: 332 CHPSERKSFGSRLAVHCCPHIFKNSA*NQRRLNFRPLESMPDISLDA*CHCLNFWPDQEY 511
P R +F R+ + +NS F ++ ++L L P ++Y
Sbjct: 1598 --PDWRHTF-VRIFSKTQHKVNENSL-------FTSWKACQTLALMHDYLILVLGPVKKY 1647
Query: 512 QRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKP 613
QR+ DS+DRP +L+++ GQTP+ LS + +HL P
Sbjct: 1648 QRILDSRDRPAHLYIHAGQTPHQLSEWCQNHLTP 1681
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 62.9 bits (146), Expect = 7e-09
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +3
Query: 405 QHKINEGSIFGPWKACQTLALMHDAIVLIFGPIK 506
QHK+NE SIF WKACQTLAL HDA++L+ GP+K
Sbjct: 1 QHKVNEASIFSDWKACQTLALAHDAVILLLGPVK 34
Score = 42.7 bits (96), Expect = 0.008
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +2
Query: 497 PDQEYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK 610
P ++YQR FD+K RP ++ + TP++LS + +H+K
Sbjct: 32 PVKKYQRCFDNKARPSKIYYHASHTPFELSTWCQAHMK 69
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 321 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 500
K++ + ++ RSD DW+ V +F K+Q+ EG +F KA QTLA ++ FGP
Sbjct: 1258 KSEKMWANHSERSDIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGP 1317
Query: 501 I 503
+
Sbjct: 1318 M 1318
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 43.2 bits (97), Expect = 0.006
Identities = 24/80 (30%), Positives = 37/80 (46%)
Frame = +3
Query: 261 FQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGP 440
F L EC N+ L++K A + NA RSDP W +++F K Q +
Sbjct: 1549 FNDSLLEECRTENDTVHLTSKPLATLINNAERSDPSWSLNMIKLFIKGQTVKKLEKMGSD 1608
Query: 441 WKACQTLALMHDAIVLIFGP 500
A Q++A ++L +GP
Sbjct: 1609 ATAGQSIASFRAEVLLAWGP 1628
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 43.2 bits (97), Expect = 0.006
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +3
Query: 255 VPFQP----DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINE 422
VP +P DL E ++ E ++S K+ A+I+ +ANRS DW +FSK+Q
Sbjct: 1582 VPLKPHHRHDLMSEALHEFEEKKVS-KSAAIIENHANRSCSDWLADVGLVFSKSQICSKW 1640
Query: 423 GSIFGPWKACQTLALMHDAIVLIFGPIKNISEFSTVKIV 539
+ F KA QT+ ++++ F P E ++++
Sbjct: 1641 DNRFRSAKAAQTIVCFQHSVLVRFAPYMRYIEKKVLEVL 1679
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 41.1 bits (92), Expect = 0.024
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3
Query: 273 LFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKAC 452
LF E N E +L K+ A ++ ++ RSDPDW IF K+Q + + KA
Sbjct: 1698 LFDEARNDFEEKKLG-KSMATLENHSGRSDPDWEVEKALIFMKSQLCTKFDNRYRDAKAG 1756
Query: 453 QTLALMHDAIVLIFGP 500
QTLA H ++ P
Sbjct: 1757 QTLACFHHNVLCRLAP 1772
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 41.1 bits (92), Expect = 0.024
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
+PF P L+ E E + LS KT A I ANR DPD+ V +F K+Q +
Sbjct: 1024 MPFNPTLWAESRARAERTYLS-KTAAQILNGANRQDPDFPDNFVALFLKSQWVKKLEKVG 1082
Query: 435 GPWKACQTLALMHDAIVLI 491
+KA QT++ +VL+
Sbjct: 1083 MQFKAGQTISSFKQQVVLL 1101
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 40.7 bits (91), Expect = 0.031
Identities = 28/91 (30%), Positives = 42/91 (46%)
Frame = +3
Query: 273 LFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKAC 452
+F E + E + S K+ A I+ +A RS DW IF K+QH + KA
Sbjct: 1831 MFHEAVQEFEAKKAS-KSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAG 1889
Query: 453 QTLALMHDAIVLIFGPIKNISEFSTVKIVLP 545
QTLA A+++ F P E ++ + P
Sbjct: 1890 QTLACFQHAVLVRFAPYMRYIEKKLMQALKP 1920
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 40.3 bits (90), Expect = 0.041
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQH-KINEGSI 431
+PF PDL+ C E + L A++ A A R PD+ A+ +F K+Q K E
Sbjct: 950 IPFNPDLWTLCRQEIENTYLKKSAAALVNA-ATRQSPDFDSHAIALFLKSQWVKKTEKIG 1008
Query: 432 FGPWKACQTLALMHDAIVLIFG 497
KA QT+A V+I+G
Sbjct: 1009 CLKIKAGQTIAAFMQQTVMIYG 1030
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 39.9 bits (89), Expect = 0.054
Identities = 25/76 (32%), Positives = 37/76 (48%)
Frame = +3
Query: 273 LFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKAC 452
LF+EC+ ++ + ++K A I + RS W IF K+Q S+F KA
Sbjct: 1603 LFLECL-MDFEEKKTSKDSATIANHCIRSQNSWPIDIADIFMKSQLCTKMESMFCEAKAG 1661
Query: 453 QTLALMHDAIVLIFGP 500
QTLA H ++ F P
Sbjct: 1662 QTLACFHHVVLARFSP 1677
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 39.9 bits (89), Expect = 0.054
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +3
Query: 321 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 500
K+ +I+ +A RSDPDW ++IF K Q KA QT+A +++ FGP
Sbjct: 1371 KSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFGP 1430
Query: 501 IKNISE 518
I +E
Sbjct: 1431 ILRQTE 1436
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 39.1 bits (87), Expect = 0.095
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +3
Query: 261 FQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGP 440
F ++ E ++ E ++S K A+I A+ +RS DW + +F K+Q + +F
Sbjct: 1300 FDQRMYDESVSEFEEKKIS-KNAAMIGAHHDRSTTDWPTNEIFLFIKSQLCTKKEKMFCD 1358
Query: 441 WKACQTLALMHDAIVLIFGPIKNISE 518
KA QTLA I+ F P+ E
Sbjct: 1359 AKAGQTLACFSHLILCKFAPLNRYIE 1384
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +3
Query: 303 YSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAI 482
+ + ++K+ A I+ ++ RS DW +IFSK+QH + F KA Q++ +
Sbjct: 1648 FDKKTSKSAATIENHSGRSCRDWLIDTAQIFSKSQHCTKFDNRFRVAKAAQSIVCFQHEV 1707
Query: 483 VLIFGP 500
+ F P
Sbjct: 1708 LCRFAP 1713
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 38.7 bits (86), Expect = 0.13
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +3
Query: 261 FQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGP 440
F L+ C L + LS K A +Q A+R DPD+ A+ +F+K+Q +
Sbjct: 1213 FDKRLWTHCRQLALRTYLS-KPAANLQQGASRQDPDFPDNAIALFNKSQWVKKLEKVGAK 1271
Query: 441 WKACQTLALMHDAIVLI 491
+KA QT++ +VL+
Sbjct: 1272 FKAGQTISAFKQQVVLL 1288
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 38.7 bits (86), Expect = 0.13
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIF 434
+PF DL+ C N + + LS +++ A R DPD+ +++F K+Q +
Sbjct: 984 IPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVA-RQDPDFPINEIKLFLKSQWVKKVEKLG 1042
Query: 435 GPWKACQTLALMHDAIVLIFG 497
K QT+A A V+++G
Sbjct: 1043 MVVKPGQTIASFAQAPVMLYG 1063
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 38.7 bits (86), Expect = 0.13
Identities = 27/76 (35%), Positives = 38/76 (50%)
Frame = +3
Query: 273 LFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKAC 452
L +C E ++LS K+ A I A++ RSD DW + +F K+Q F KA
Sbjct: 1521 LLDQCRQEFEETKLS-KSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAG 1579
Query: 453 QTLALMHDAIVLIFGP 500
QTLA I++ F P
Sbjct: 1580 QTLACFPHKILVEFSP 1595
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 38.3 bits (85), Expect = 0.17
Identities = 26/86 (30%), Positives = 40/86 (46%)
Frame = +3
Query: 282 ECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTL 461
E ++ E +LS K+ A I+ ++ RS DW IF K+Q + F KA QTL
Sbjct: 1853 EAVHAFEEKKLS-KSMATIENHSGRSCEDWPIDKALIFMKSQLCTKFDNRFRSAKAGQTL 1911
Query: 462 ALMHDAIVLIFGPIKNISEFSTVKIV 539
A A++ F P E +++
Sbjct: 1912 ACFQHAVLCRFAPYMRYIEAKVFEVL 1937
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 37.9 bits (84), Expect = 0.22
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +3
Query: 306 SQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIV 485
S+ +K+ A+I +A RS DW +F K+QH + F KA Q++ A++
Sbjct: 1652 SKKVSKSAAIIANHAGRSCRDWLADVGLVFMKSQHCTKFDNRFRDAKAAQSIVCFQHAVL 1711
Query: 486 LIFGPIKNISEFSTVKIVLPT 548
F P E ++ VLP+
Sbjct: 1712 CRFAPYMRYIEMK-LQEVLPS 1731
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 37.5 bits (83), Expect = 0.29
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 321 KTQAVIQANANRSDPDWRYTAVRIFSKTQ--HKINEGSIFGPWKACQTLALMHDAIVLIF 494
K++ +I+ ++ RSDPDW ++IF K Q K+ + + KA QT+A A++ F
Sbjct: 161 KSRNLIEKHSYRSDPDWPSNYLKIFLKQQVCTKMEKRGVDA--KAGQTIACFSHAVLCRF 218
Query: 495 GP 500
GP
Sbjct: 219 GP 220
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 37.5 bits (83), Expect = 0.29
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 318 NKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFG 497
+K+ A I+ ++ RS DW +IFSK+Q + F KA Q++ A++ F
Sbjct: 1648 SKSAATIENHSGRSCRDWPIEVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFA 1707
Query: 498 PIKNISEFSTVKIVLP 545
P E V+ VLP
Sbjct: 1708 PYMRYIEMK-VQEVLP 1722
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 37.5 bits (83), Expect = 0.29
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +3
Query: 255 VPFQPD---LFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEG 425
VP +P+ F+E N + +K+ A I+ ++ RS DW +IFSK+Q
Sbjct: 1626 VPLKPNHNVRFMEEALWNFEEKKLSKSAATIENHSGRSCRDWPTDVAQIFSKSQLCTKFD 1685
Query: 426 SIFGPWKACQTLALMHDAIVLIFGPIKNISEFSTVKIVLP 545
+ F KA Q++ A++ F P E V VLP
Sbjct: 1686 NRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEMK-VHEVLP 1724
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 37.1 bits (82), Expect = 0.38
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 321 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 500
K+ A I+ ++ RS+ DW+ +F K+Q+ + F KA QT+ H ++ F P
Sbjct: 1773 KSTATIENHSGRSNLDWKIDTGLVFMKSQNCTKFENRFRDAKAAQTIVCFHHIVLARFAP 1832
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 36.7 bits (81), Expect = 0.51
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +3
Query: 261 FQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGP 440
F L+ C L + LS T A +Q A R DPD+ A+ +F+K+Q +
Sbjct: 1138 FDKRLWAHCRQLALRTYLSKPT-ANLQQGAKRQDPDFPENAIALFNKSQWVKKLEKVGCR 1196
Query: 441 WKACQTLALMHDAIVLI 491
+KA QT++ + VL+
Sbjct: 1197 FKAGQTISAFKQSTVLL 1213
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 35.5 bits (78), Expect = 1.2
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = +3
Query: 276 FVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQ 455
F+E N + + ++K+ A I+ +A RS DW +F K+Q + F KA Q
Sbjct: 1661 FMERANRDFELKKTSKSAATIENHAQRSCRDWLADVGLVFMKSQLCTKWDNRFRNAKAAQ 1720
Query: 456 TLALMHDAIVLIFGPIKNISEFSTVKIVLP 545
++ A++ F P E +++ P
Sbjct: 1721 SIVCFQHAVLCRFAPYMRYIEMKLNEVLPP 1750
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 35.5 bits (78), Expect = 1.2
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +3
Query: 255 VPFQPDLFVECIN--LNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQH-KINEG 425
+ F PDL+ +C + N+Y Q K +I+ R PD+ + +F K+Q K NE
Sbjct: 1015 IKFDPDLWWKCADEVQNKYLQ---KPLHMIKNGILRQSPDFGERHIALFLKSQWVKKNEK 1071
Query: 426 SIFGPWKACQTLALMHDAIVLIFG 497
KA QT+A + + V+IFG
Sbjct: 1072 IGTVNVKAGQTIAAFYQSTVMIFG 1095
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 35.5 bits (78), Expect = 1.2
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +3
Query: 258 PFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFG 437
PF L+ C L + LS T + Q R DPD+ A+ +F+K+Q +
Sbjct: 1295 PFDKRLWTHCRQLALRTYLSKPTSNLQQGA--RQDPDFPDNAIALFNKSQWVKKLEKVGA 1352
Query: 438 PWKACQTLALMHDAIVLI 491
+KA QT++ +VL+
Sbjct: 1353 RFKAGQTISAFKQEVVLL 1370
>UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20;
Carlavirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Potato virus S (strain Peruvian)
Length = 353
Score = 35.5 bits (78), Expect = 1.2
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +3
Query: 315 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 494
+ K+ A I+ ++NRS DW +FSK+Q + F KA QT+ +++ F
Sbjct: 37 TQKSAATIENHSNRSCRDWLADMGMVFSKSQLCTKFDNRFRDAKAAQTIVCFQHSVLCRF 96
Query: 495 GPIKNISEFSTVKIVLP 545
P E + VLP
Sbjct: 97 APYMRYIE-KKLNEVLP 112
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 35.5 bits (78), Expect = 1.2
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +3
Query: 255 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ--HKINE-G 425
+PF+ DL+ ++ + + LS K + +I+ R PD+ + +F K+Q K+ + G
Sbjct: 1200 IPFEEDLWNSSMHEVQKTYLS-KPENMIKNGMARQSPDYDPNVISLFLKSQWVKKMEKLG 1258
Query: 426 SIFGPWKACQTLALMHDAIVLIFG 497
+I K QT+A H A V++FG
Sbjct: 1259 AI--KIKPGQTIASFHQATVMLFG 1280
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 35.1 bits (77), Expect = 1.5
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 315 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 494
++K+ A I+ +ANRS DW IFSK+Q + F KA Q++ ++ F
Sbjct: 1687 TSKSAATIENHANRSCRDWLIDVGLIFSKSQLCTKFDNRFRDAKAAQSIVCFQHEVLCRF 1746
Query: 495 GP 500
P
Sbjct: 1747 AP 1748
>UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Rep:
Polyprotein - Blackberry virus X
Length = 244
Score = 34.7 bits (76), Expect = 2.0
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 288 INLNEYSQ-LSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 407
+++NE+ + K +A + N+ RSDPDW+ + +F K Q
Sbjct: 170 VSMNEFKENFFKKDEATMVRNSARSDPDWKKNEIFLFMKQQ 210
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic
virus|Rep: Replicase - White ash mosaic virus
Length = 954
Score = 33.9 bits (74), Expect = 3.6
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 321 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 494
KT A + A R DPD+ + +F+K+Q + +KA QT++ +VL+F
Sbjct: 812 KTLAQLTNGAPRQDPDFPDNFIALFNKSQWVKKLDKVGAKFKAGQTISSFKQEVVLLF 869
>UniRef50_Q6F4M8 Cluster: Oxygenase component of 4-NP monooxygenase;
n=2; Actinomycetales|Rep: Oxygenase component of 4-NP
monooxygenase - Rhodococcus opacus (Nocardia opaca)
Length = 528
Score = 33.5 bits (73), Expect = 4.7
Identities = 28/88 (31%), Positives = 38/88 (43%)
Frame = -3
Query: 601 GRSKPREIVWSLASIHKQVGRTIFTVENSLIFLIGPKIKTMASCIKANVWHAFQGPKIEP 422
G KP I L H I N LI G + + S KA+ H F GPK+E
Sbjct: 357 GLFKPNNIYVDLGRAHYL--ENIHNAVNQLIEFCGRGV--VMSPTKADFDHPFLGPKLEE 412
Query: 421 SLILC*VFENMRTAVYRQSGSERFAFAW 338
+L + R +++RQ SER+ W
Sbjct: 413 ALRGTSISARDRVSIFRQI-SERYLTQW 439
>UniRef50_Q6BLI3 Cluster: Similar to ca|CA3554|IPF7770 Candida
albicans IPF7770 unknown function; n=1; Debaryomyces
hansenii|Rep: Similar to ca|CA3554|IPF7770 Candida
albicans IPF7770 unknown function - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 369
Score = 32.7 bits (71), Expect = 8.2
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 136 QKTPFPTLLPSLQTFSF*RILGTFLFSSLCRAYKRHPNHKFLFSPT-FSLNVSISMSTHS 312
+K PF T+L L S +G ++ S L + +K+ NH+ +F P FS N + ST+S
Sbjct: 89 RKLPFRTIL-LLIICSSSLTIGVYVISQLVK-FKQDGNHRRIFLPLWFSANW-LFKSTYS 145
Query: 313 FPTRLK 330
FP LK
Sbjct: 146 FPKGLK 151
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,853,953
Number of Sequences: 1657284
Number of extensions: 16012680
Number of successful extensions: 41870
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 40487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41858
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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