Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060618.seq
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 27 3.2
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 3.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 4.3
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 26 4.3
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.6
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.5
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 9.9
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 25 9.9
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 25 9.9
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +2
Query: 56 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRF-----RPSFLPYRLSPSDESLAHFCF 214
NG+ + +A + + LLS+ I +RF +P FLP S + SL +CF
Sbjct: 210 NGSSCCAYVASIANRRLVLCLLSSLINTAMRFNTMFWKPEFLPLDNSVAHMSLIEYCF 267
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 307 HSFPTRLKLSSKRTQIVRIP 366
H P R++LSS+ QI RIP
Sbjct: 5 HGTPQRIQLSSRAIQICRIP 24
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 610 FQMGRSKPREIVWSLASIHKQVGRTIFTVENSLIFLIGPKIKTMASCIKANVWH 449
F +G+ ++ L H + FTV N+ + KI A C K NV H
Sbjct: 1134 FLLGKES-EHLLNELDDTHSSLSTVDFTVNNTESLINSLKIFKKAGCYKLNVEH 1186
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -1
Query: 168 GRKEGRKRSLLAMEAESK-VGSYFESCLGAITLRVWAPFS*GRSTHGN*LENSP 10
G G +L + S GSY S GA AP S R N L N P
Sbjct: 106 GNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLNNPP 159
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 117 YFRPPLPKDSVSDPPSFLTDFLLLTNPWHISVF 215
YFR + K S LT FL++ NP H +V+
Sbjct: 47 YFRAIMAKKEYSLRALNLTGFLIMNNPAHYTVW 79
>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 94 MFGCYNAEGLGAILIREI 41
+FGC++A GLG L EI
Sbjct: 64 LFGCWSANGLGIALAYEI 81
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 285 CI-NLNEYSQLSNKTQAVIQANANRSDPDWRYT 380
CI ++ YS AN NR DP +RYT
Sbjct: 445 CIASIEPYSLKDEPALLEALANMNREDPSFRYT 477
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 2 ARKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLL 121
+RK F + + D P++ GAQT S P S+ D ++
Sbjct: 316 SRKSSFQSSYNDADRPFQVGAQTQS--TPNRISRSDSPIV 353
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 250 DWDVVYRLDIEMKTEMCQGFVRRRKSVRKE 161
D+D VY+ KT++C +V R+ +RKE
Sbjct: 54 DFDEVYK---NPKTKLCCSYVIRKALIRKE 80
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 298 MSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQKLSIKSTKAQ 429
++ H F + K + IV + T G + +YFQ S K A+
Sbjct: 118 IALHVFVYKRKFPPHKYLIVTMITAGVSIFSYFQNTSSKGKHAE 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,183
Number of Sequences: 5004
Number of extensions: 68392
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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