Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060618.seq
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186...    32   0.36 
06_01_0438 + 3110703-3111945,3112486-3113057                           32   0.48 
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558...    29   2.5  
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    28   5.9  
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398...    28   5.9  
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221...    28   5.9  
12_02_0674 - 21745321-21746223,21746229-21747608                       28   7.7  
09_02_0411 + 8721855-8722232                                           28   7.7  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    28   7.7  
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    28   7.7  

>03_02_0874 +
           12017069-12018051,12018137-12018316,12018421-12018600,
           12018718-12018797,12018999-12019259,12019360-12019474,
           12019631-12019855,12020840-12020849
          Length = 677

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 24  INFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDP--PSFLTDFLL 185
           I  HG   ++R+A  P AL H  M +    L   PP P  S S P  P+  + FLL
Sbjct: 31  IQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFLL 86


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 571 SLASIHKQVGRTIFTVENSLIFLIGPKIKTMASCIKANVWHAF--QGPKIEPSLIL 410
           S+A IH     TIF V+NS+IF +     T  S IK    H F     +I PSL L
Sbjct: 341 SVAGIHPIDTSTIFLVQNSIIFSVSS--DTTTSSIKVGDHHKFLLNENEITPSLFL 394


>02_01_0753 -
           5586705-5586766,5587864-5588056,5588154-5588423,
           5588522-5588687,5589049-5589209,5590065-5590181,
           5590269-5590549,5590750-5590833,5591100-5592542,
           5593167-5593575
          Length = 1061

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -1

Query: 468 SRLMSGMLSKGRKLSLR*FYAEFLKICGQ--QCTASRDPN-----DLRSLG*QLESCWK 313
           S ++ GM+  G K  LR  YA+F ++  Q  +  A  D N      L SL  Q ES WK
Sbjct: 482 STMLKGMIESGTKQGLREGYAQFTEVLSQKTKVIAPDDSNLSKDEILSSLQTQEESIWK 540


>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 308 TAFQQDSSCHPSERKSFGS--RLAVHCCPHIFK 400
           T FQ  SS    ++  F S  +L + CCPHI K
Sbjct: 899 TPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISK 931


>03_02_0875 +
           12038365-12039329,12039417-12039593,12039651-12039893,
           12040045-12040124,12040242-12040508,12040599-12040710,
           12040757-12041071,12041357-12041366
          Length = 722

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 24  INFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDP--PSFLTDFLL 185
           I  HG   ++R+A  P AL H  M +    L   PP P+ + S P  P+  + FLL
Sbjct: 31  IQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPP-PQAASSSPTVPAAHSPFLL 85


>02_01_0325 -
           2208480-2208674,2208772-2210609,2210980-2211109,
           2211231-2211270,2211409-2211531,2211940-2212030,
           2212396-2212480,2212565-2212720,2212797-2212853,
           2212940-2213110,2213313-2213330,2213479-2213551,
           2213754-2213839,2214348-2214466,2214542-2214641
          Length = 1093

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -3

Query: 457 VWHAFQGPKIEPSLILC*VFENMRTAVYRQSGSERFAFAWMTA*VLLESCEYSLRL 290
           VW      +  P++I   +F  MR  VY+ +   R AF+     +LLE+ EY L L
Sbjct: 101 VWSIDSLGRTNPAIIRAFLFRKMRKKVYKSNIILRNAFS-----MLLETAEYLLNL 151


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +1

Query: 268 PTFSLNVSISMSTHSFPTRLKLSSKRTQIVRIPT--GGTLLSAYFQKLSIKSTKAQFS 435
           PT +    +S  T   PT  +     T   +IPT  G + LS    K+S  S   QFS
Sbjct: 621 PTTARTGELSTPTDKIPTTTRAGDLSTATSKIPTAPGTSELSTTTSKISSTSCAGQFS 678


>09_02_0411 + 8721855-8722232
          Length = 125

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 184 RRKSVRKEGGSETESFGNGGRK 119
           R+K  R++GG   ES G GGR+
Sbjct: 75  RKKGEREKGGRRRESTGGGGRR 96


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 9   RGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKD---SVSDPPSFLTDF 179
           +G++ +    + S   MAP PSA   P + R +  L   PP P     S S    F+ + 
Sbjct: 325 QGTAGLMASSATSAAAMAPPPSAPSLPEVERVILELLSLPPSPLQPAMSGSTATCFICNK 384

Query: 180 LLLTNPWHI 206
           LLL    H+
Sbjct: 385 LLLPTDLHL 393


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 176 VCKEGRRVGNGVFWQWRPKVKSGHISSHVWVL 81
           V  EG   G G  W WR KVK   ++   WVL
Sbjct: 18  VAVEGDEAGKGRRW-WRVKVKLSTVAVVAWVL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,384,829
Number of Sequences: 37544
Number of extensions: 466259
Number of successful extensions: 1250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)