Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060618.seq
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)                     28   6.0  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 172

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 83  APKHDSKYDPTLLSASI---AKRLRFRPSFLPYRLSPSDESLA 202
           AP    K D T L A +   A R R  PSF P  LSP    LA
Sbjct: 104 APGPGEKGDHTALKAGLSELAPRARSSPSFFPMALSPIPTPLA 146


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 244  PNHKFLFSPTFSLNVSISMSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQ 399
            P+ K L      L  S++ S     T +       Q+  IPTGG  LS YF+
Sbjct: 1082 PDAKVLPPIASFLKPSVNGSMQFHTTNVTSKDVTIQVTLIPTGGKELSVYFR 1133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,072,143
Number of Sequences: 59808
Number of extensions: 517652
Number of successful extensions: 1208
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)