Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060618.seq
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-10|CAN86582.1|  705|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z68161-8|CAH60763.1|  625|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z68161-5|CAA92299.2|  764|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z68161-4|CAD89735.1|  781|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AY185494-1|AAO26317.1|  764|Caenorhabditis elegans poly ADP-ribo...    29   3.0  
AY185493-1|AAO26316.1|  781|Caenorhabditis elegans poly ADP-ribo...    29   3.0  
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    28   6.9  
AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z68161-10|CAN86582.1|  705|Caenorhabditis elegans Hypothetical
           protein F20C5.1d protein.
          Length = 705

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 336 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGP 440
           +Q + N+ DPD  +RY  +  F  +Q K+ E + +GP
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 320


>Z68161-8|CAH60763.1|  625|Caenorhabditis elegans Hypothetical
           protein F20C5.1c protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 336 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGP 440
           +Q + N+ DPD  +RY  +  F  +Q K+ E + +GP
Sbjct: 128 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 164


>Z68161-5|CAA92299.2|  764|Caenorhabditis elegans Hypothetical
           protein F20C5.1b protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 336 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGP 440
           +Q + N+ DPD  +RY  +  F  +Q K+ E + +GP
Sbjct: 267 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 303


>Z68161-4|CAD89735.1|  781|Caenorhabditis elegans Hypothetical
           protein F20C5.1a protein.
          Length = 781

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 336 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGP 440
           +Q + N+ DPD  +RY  +  F  +Q K+ E + +GP
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 320


>AY185494-1|AAO26317.1|  764|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-3 short form protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 336 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGP 440
           +Q + N+ DPD  +RY  +  F  +Q K+ E + +GP
Sbjct: 267 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 303


>AY185493-1|AAO26316.1|  781|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-3 long form protein.
          Length = 781

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 336 IQANANRSDPD--WRYTAVRIFSKTQHKINEGSIFGP 440
           +Q + N+ DPD  +RY  +  F  +Q K+ E + +GP
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 320


>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical
           protein C52A11.4c protein.
          Length = 2202

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 396 SKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKNISEFSTVKIVLP 545
           +K  ++++ G++ G W   + + L  +   L FG +   S    VK +LP
Sbjct: 10  NKVNYQVSRGNLSGDWTQVEVIHLNTETGGLGFGIVGGTSTGVVVKTILP 59


>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 229 AYKRHPNHKFLFSPTFSLNVSISMSTHSFPTRLK 330
           A K+HP HKFLF     L    S+  + +P +++
Sbjct: 186 AIKKHPEHKFLFG---YLGTRFSLGKNQYPHKMQ 216


>AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical
           protein R01B10.3 protein.
          Length = 98

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 282 ECINLNEYSQLSNKTQAVIQANANRSDPDW---RYTAVRIFSKTQHKINEGSI 431
           +C+   + +++     ++ + NA R +P W   RYTA+ +F      +  GSI
Sbjct: 21  DCVKQRKVAEVPQIGYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSI 73


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 612 GFRWDEANRERSYGVWPPYTNKLG 541
           G +W + +R+RSY  + P+  ++G
Sbjct: 476 GEKWTQTDRKRSYSYFDPFPKRIG 499


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
            protein Y110A7A.16 protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 663  LRLVKRQSSHCRHEICNGFRWDEANRERSYG 571
            L+L    S+   H +C+ F W +A+RE   G
Sbjct: 1009 LKLAGSSSTQIVHVLCDAFEWLDASREVEVG 1039


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,577
Number of Sequences: 27780
Number of extensions: 382414
Number of successful extensions: 1054
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)