Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060618.seq
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.37 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.0  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 259 GTYDWDVVYRLDIEMKTEMCQGFVRRRKSVRKEGGSETESFGNGGR 122
           G YD    Y  D++    M    V R K V       +E  GNGGR
Sbjct: 61  GEYDHTKNYPFDVDQWRGMTFVTVPRYKGVPSSLNVISEKIGNGGR 106


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 247 NHKFLFSPTFSLNV 288
           NH+ L +PTF LNV
Sbjct: 136 NHRKLIAPTFHLNV 149


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 550 VCVWRPNSIRSLSVCFVPSETITNFMSAMTTLAFDQS 660
           V  W P  I  L+  FVP E     M A+T L +  S
Sbjct: 316 VACWLPFFILYLATPFVPVEPPDILMPALTWLGWINS 352


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 19/71 (26%), Positives = 27/71 (38%)
 Frame = -3

Query: 289 IHSTKRSG*KGTYDWDVVYRLDIEMKTEMCQGFVRRRKSVRKEGGSETESFGNGGRK*SR 110
           +H  K     GT +  +  R D E      Q  +   K + K  G           K SR
Sbjct: 355 VHDPKAHSKGGTLENTINGRAD-EEAAPAPQHLIHPGKDINKLYGMTPSDID----KYSR 409

Query: 109 VIFRVMFGCYN 77
           ++F V F C+N
Sbjct: 410 IVFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 19/71 (26%), Positives = 27/71 (38%)
 Frame = -3

Query: 289 IHSTKRSG*KGTYDWDVVYRLDIEMKTEMCQGFVRRRKSVRKEGGSETESFGNGGRK*SR 110
           +H  K     GT +  +  R D E      Q  +   K + K  G           K SR
Sbjct: 355 VHDPKAHSKGGTLENTINGRAD-EEAAPAPQHLIHPGKDINKLYGMTPSDID----KYSR 409

Query: 109 VIFRVMFGCYN 77
           ++F V F C+N
Sbjct: 410 IVFPVCFVCFN 420


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 378 TAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKNISE 518
           T++    K Q+     S+   W A   ++L++  +++IF P +NI E
Sbjct: 378 TSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLIIFIP-RNIYE 423


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 19/71 (26%), Positives = 27/71 (38%)
 Frame = -3

Query: 289 IHSTKRSG*KGTYDWDVVYRLDIEMKTEMCQGFVRRRKSVRKEGGSETESFGNGGRK*SR 110
           +H  K     GT +  +  R D E      Q  +   K + K  G           K SR
Sbjct: 293 VHDPKAHSKGGTLENTINGRAD-EEAAPAPQHLIHPGKDINKLYGMTPSDID----KYSR 347

Query: 109 VIFRVMFGCYN 77
           ++F V F C+N
Sbjct: 348 IVFPVCFVCFN 358


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 139 KTPFPTLLPSLQTFSF*RILGTFLFSSLCRAYKRHPNHKFLFSPTFS 279
           K P+PT L      SF  I  T +  ++   + ++ + +  FS   S
Sbjct: 269 KVPYPTALDFFVFLSFAFIFATIIQFAVVHYFTKYGSGECYFSSDLS 315


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 559 WRPNSIRSLSVCFVPSETI 615
           W P     + + +VPSE I
Sbjct: 97  WNPEEYGGVEMLYVPSENI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,793
Number of Sequences: 438
Number of extensions: 4736
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)