Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060618.seq
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23575.1 68418.m02766 transmembrane protein, putative similar...    32   0.30 
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con...    31   0.92 
At1g17040.1 68414.m02071 transcription factor-related contains P...    31   0.92 
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f...    30   1.2  
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f...    30   1.2  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   6.5  
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH...    27   8.5  

>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 556 VWRPNSIRSLSVCFVPSETITNFMSAMTTLAFDQS 660
           VW P SIR+ S+ + PSET+ N  S    + F +S
Sbjct: 107 VWTPESIRTKSLTYYPSETLQNNGSLYAHIFFARS 141


>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
           contains Pfam profile PF05602: Cleft lip and palate
           transmembrane protein 1 (CLPTM1)
          Length = 590

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 556 VWRPNSIRSLSVCFVPSETITN 621
           VW+P S R+LS+ + PSE + N
Sbjct: 105 VWKPESTRTLSMTYYPSEALKN 126


>At1g17040.1 68414.m02071 transcription factor-related contains Pfam
           profile: PF00017 Src homology domain 2; similar to
           transcription factor [Danio rerio] (GI:3687402)
          Length = 641

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 230 ARHRDENRNVPRIRQKEKVCKEGRRV-GNGVFWQWRPK 120
           +R+RD   ++ RIR  E+   E + V GNG   +WRP+
Sbjct: 330 SRNRDSVSSMKRIRLGEEKVSESKIVNGNGTSMEWRPQ 367


>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 413 NQRRLNFRPLESMPDISLDA*CHCLNFWPDQEYQRVFDS 529
           ++R LNF+PL+S   ISL      L  W + E++R +DS
Sbjct: 686 DERGLNFKPLQSESSISLGIATRVLVEWNEGEHER-YDS 723


>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 413 NQRRLNFRPLESMPDISLDA*CHCLNFWPDQEYQRVFDS 529
           ++R LNF+PL+S   ISL      L  W + E++R +DS
Sbjct: 686 DERGLNFKPLQSESSISLGIATRVLVEWNEGEHER-YDS 723


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 109 PDFTFGLHCQKTPFPTLLPSLQTFS 183
           PD T  L   +TPFP  +P +++FS
Sbjct: 848 PDVTQNLPVSRTPFPARVPVVKSFS 872


>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
           (CHX16) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 847

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 268 PTFSLNVSISMSTHSFPTRLKLSSKRTQIVRIPTGGTLL 384
           P+  L  S S   + +PTRLK    R   V++ TGG LL
Sbjct: 77  PSTGLGQSYSFRFNKYPTRLKYELYRDS-VQLITGGILL 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,309,339
Number of Sequences: 28952
Number of extensions: 371723
Number of successful extensions: 1068
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)