Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060617.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    25   0.76 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   7.1  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   7.1  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   9.4  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 169 ISNSTGSPILRCSVLPLN*LKWKKRRACLS 80
           +SN+   P+L  ++  L   KWK+ RA LS
Sbjct: 63  VSNTNTEPLLSEALTNLPGEKWKEMRATLS 92


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 625 CIINSTSSPRVNSSLH 578
           C INSTSS  V + +H
Sbjct: 183 CSINSTSSQPVGTQIH 198


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 181 VEQANQLHQQSLKLHRK 231
           VEQ N LH   L +H++
Sbjct: 300 VEQMNLLHSNDLNMHQQ 316


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 113 TEVEKKTGLPLTALYETIRMEKFFN-NAGLSNR 18
           ++ E+K G      Y+T+ +EK F+ N  L+ R
Sbjct: 238 SQFERKRGRQTYTRYQTLELEKEFHFNRYLTRR 270


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 113 TEVEKKTGLPLTALYETIRMEKFFN-NAGLSNR 18
           ++ E+K G      Y+T+ +EK F+ N  L+ R
Sbjct: 240 SQFERKRGRQTYTRYQTLELEKEFHFNRYLTRR 272


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 98  KTGLPLTALYETIRMEKF 45
           KT LPLT LY+ + + +F
Sbjct: 50  KTPLPLTLLYKLLGIIQF 67


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory
          receptor candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 98 KTGLPLTALYETIRMEKF 45
          KT LPLT LY+ + + +F
Sbjct: 6  KTPLPLTLLYKLLGIIQF 23


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 605 ITESQFFFTFSFRKMKEYLFYNIGTFNKTKI 513
           I  ++FF  ++    + Y  + +GTFN   I
Sbjct: 421 IMGAEFFKLYAVEYFQMYAQFIVGTFNSVFI 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,538
Number of Sequences: 336
Number of extensions: 3458
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)