Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060617.seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    30   0.27 
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   4.4  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   5.8  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   5.8  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 504 HEENFGFIERADVVKEIFFHFSETKC-KEELTLGDDVEFIIQ 626
           H ENFGF +   V       FS  KC K+ L   +D EF +Q
Sbjct: 611 HGENFGFTDNNSVPPLTDLAFSAAKCFKDILRAIEDAEFSVQ 652


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 577 LVSEK*KNISFTTSARSIKPKFSSWSRQLHDI*LDVRGSQNV 452
           LVS   K I +T SA SI P  S   +Q   + ++   SQN+
Sbjct: 65  LVSTSDKGIDYTLSAMSINPNLSVPEQQHLWLQIEDSSSQNI 106


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 340 FLPY--TKDDVEGNVTLRTGDAVSFQIATNQRGTLGACHIRFENPVHPVKYHG 492
           FLPY      +     L+  D  + Q+    R  +GA H+  +NP + V++ G
Sbjct: 189 FLPYHLLLTSIGNAGYLKYQDVSTGQLVAEHRTGMGASHVLHQNPHNAVEHVG 241


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 388 TGDAVSFQIATN-QRGTLGACHIRFENPVHPVK 483
           T D  +F + T   R T   C I   +P HP+K
Sbjct: 44  TSDKDTFNMVTEIPRWTQAKCEISLTSPFHPIK 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,815
Number of Sequences: 5004
Number of extensions: 57780
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)