Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060617.seq
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   5e-16
SB_31618| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_53452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_27430| Best HMM Match : MORN (HMM E-Value=1.3)                      29   4.6  
SB_55253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 33/64 (51%), Positives = 47/64 (73%)
 Frame = +3

Query: 54  HSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAPEV 233
           HSYGFIQCCER+ R+FFH+SQ+ G+ + L+IGD VEF ++ D+R+ KP+A  +  + P  
Sbjct: 64  HSYGFIQCCERELRIFFHYSQYKGDLDDLRIGDEVEFGVSCDQRSKKPVAVNIVLLTPGT 123

Query: 234 VLSE 245
           V  E
Sbjct: 124 VSFE 127



 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 28/69 (40%), Positives = 45/69 (65%)
 Frame = +3

Query: 24  RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYDRRTGKPIA 203
           RE G++  L   +GFI+CC+R AR+FFHFS+   ++  ++IGD VEF +T D  + K + 
Sbjct: 363 REMGVVAALKDGFGFIRCCDRDARMFFHFSELVESSRQIQIGDEVEFSITEDANSMKRVN 422

Query: 204 STVTKIAPE 230
           +   +I P+
Sbjct: 423 AIKVRILPK 431



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 32/44 (72%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
 Frame = +3

Query: 507 EENFGFIERADVVKEIFFHFSE-TKCKEELTLGDDVEFIIQTRN 635
           +E+FGFIERAD V EIFFH+SE      ELTLGDDVEFIIQ RN
Sbjct: 212 KESFGFIERADKVSEIFFHYSEFLDDINELTLGDDVEFIIQPRN 255



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +3

Query: 33  GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEF 164
           G++  +  S+GFI+  ++ + +FFH+S+F  +   L +GD VEF
Sbjct: 206 GVVSSMKESFGFIERADKVSEIFFHYSEFLDDINELTLGDDVEF 249



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
 Frame = +1

Query: 256 GTVTTEVKGE----GSGDNTGRISYETRGECFFLPYTKDDV-EGNVTLRTGDAVSFQIAT 420
           GTV+ E+  E    G  D   R+    R ECF+L ++ +D  + N+ +  GD V F ++ 
Sbjct: 122 GTVSFEICSEEQVTGIVDAEARLLKPGRSECFYLSFSANDCKDPNMPIHKGDKVQFVVSI 181

Query: 421 NQR-GTLGACHIRFENPVHPVKYHGVVCSMKK 513
           ++R G   A  +         KY GVV SMK+
Sbjct: 182 DKRTGVSRAKDVMLLETAKAEKYQGVVSSMKE 213



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 498 LLHEENFGFI-ERADVVKEIFFHFSETKCKEELTLGDDVE-FIIQTRNGPRS 647
           LL   +FGFI    +  K +FFH SE     EL  GD+VE F++Q R G  S
Sbjct: 712 LLLRRHFGFIGHENEEGKNLFFHISEVAENVELQAGDEVEFFVVQKRGGKLS 763



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 507 EENFGFIERADVVKEIFFHFSE-TKCKEELTLGDDVEFII 623
           ++ FGFI   D    +FFHFSE  +   ++ +GD+VEF I
Sbjct: 372 KDGFGFIRCCDRDARMFFHFSELVESSRQIQIGDEVEFSI 411



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +1

Query: 304 GRISYETRGECFFLPYTKDDVEGNVTLRTGDAVSFQIATNQRGTL-GACHIRFENPVHPV 480
           GRI +ET      + +++ DV G  +LRT D V F IA ++R +L  A +I       P 
Sbjct: 299 GRIVFETDDGPSDIVFSERDVSGEFSLRTKDIVDFNIAVDRRDSLRRATNITLVKVAEPE 358

Query: 481 K----YHGVVCSMK 510
           K      GVV ++K
Sbjct: 359 KGDNREMGVVAALK 372



 Score = 35.5 bits (78), Expect = 0.040
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 15  PPIRETGIIEKLLHS-YGFIQCCERQAR-LFFHFSQFSGNTEHLKIGDPVEFEMTYDRRT 188
           P I    + E LL   +GFI     + + LFFH S+ + N E L+ GD VEF     +R 
Sbjct: 702 PSIELIRLRELLLRRHFGFIGHENEEGKNLFFHISEVAENVE-LQAGDEVEF-FVVQKRG 759

Query: 189 GKPIASTVTKIAPEVV 236
           GK  A  V KI   V+
Sbjct: 760 GKLSAVNVRKIRVMVI 775



 Score = 34.7 bits (76), Expect = 0.071
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +3

Query: 498 LLHEENFGFIERADVVKEIFFHFSETKCK-EELTLGDDVEF 617
           +L   ++GFI+  +    IFFH+S+ K   ++L +GD+VEF
Sbjct: 60  VLDAHSYGFIQCCERELRIFFHYSQYKGDLDDLRIGDEVEF 100


>SB_31618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 31/42 (73%), Positives = 38/42 (90%)
 Frame = +3

Query: 24  RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIG 149
           RETGIIEKLLHSYGFIQCCER+ R+FFH+SQ+ G+ + L+IG
Sbjct: 3   RETGIIEKLLHSYGFIQCCERELRIFFHYSQYKGDLDDLRIG 44


>SB_53452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 364 VEGNVTLRTGDAVSFQIATNQRGTLGACHIRFENPVHPVKYHGVVCSMKKILVLLNV 534
           VEGN+T +  + ++FQ + +Q G+     +        +K+ GV  S  ++ VL+NV
Sbjct: 22  VEGNITWKLAEFLTFQSSQSQSGSKSPDQVTSLGNEVTIKFTGVT-SADQLHVLVNV 77


>SB_27430| Best HMM Match : MORN (HMM E-Value=1.3)
          Length = 183

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/82 (28%), Positives = 34/82 (41%)
 Frame = +1

Query: 253 QGTVTTEVKGEGSGDNTGRISYETRGECFFLPYTKDDVEGNVTLRTGDAVSFQIATNQRG 432
           QG V   ++ +G    T  + Y TRG   F+    D V G      GD V     T Q  
Sbjct: 108 QGDVVCSLRYKG----TWYVHYATRGRGMFITLQGDVVCGMFITLQGDVVCGMFITLQGD 163

Query: 433 TLGACHIRFENPVHPVKYHGVV 498
            +  C +R++   + +  HG V
Sbjct: 164 VV--CSLRYKGTWYVLTLHGDV 183


>SB_55253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 495 CLLHEENFGFIERADVVKEIFFHFSETKCKEELTLGDDVEFIIQ 626
           CLL  E+  F  RA++ + +  H   T   EE  L DD   IIQ
Sbjct: 157 CLLGNEHSTFFRRAELKELVDLHKEGTDANEE-PLRDDEVLIIQ 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,579,486
Number of Sequences: 59808
Number of extensions: 412551
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)