Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060617.seq
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 34 0.082
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 31 0.58
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 31 1.0
AF067947-6|AAO25992.1| 255|Caenorhabditis elegans Hypothetical ... 30 1.8
Z68493-10|CAA92797.2| 329|Caenorhabditis elegans Hypothetical p... 29 2.3
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 29 2.3
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 29 3.1
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 29 3.1
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 34.3 bits (75), Expect = 0.082
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Frame = +3
Query: 483 ISWSCLLHEENFGFIERADVVKEIFFH-----FSETKCKEELTLGDDVEF---IIQTRNG 638
+ W +L +GFI R D K+IF H S T+ TLGDD E +++ +NG
Sbjct: 70 VKWYSVLRR--YGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNG 127
Query: 639 PRSGHVT 659
P + +VT
Sbjct: 128 PEAANVT 134
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Frame = +3
Query: 483 ISWSCLLHEENFGFIERADVVKEIFFH-----FSETKCKEELTLGDDVEF---IIQTRNG 638
+ W +L +GFI R+D K++F H S+T+ TL D+ E ++ +NG
Sbjct: 68 VKWYSVLRR--YGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNG 125
Query: 639 PRSGHVT 659
P + +VT
Sbjct: 126 PEAANVT 132
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 200 NWFACSTIISH----FKFHRVTYFKMFSITTELTEVEKKTGLPLTALYE 66
+W +C TIISH + +T M + T LTE+EKK P T+LYE
Sbjct: 166 DWISCFTIISHPEKEDQLIGMTLSGMMKVWT-LTELEKKD--PATSLYE 211
>AF067947-6|AAO25992.1| 255|Caenorhabditis elegans Hypothetical
protein T10B5.10 protein.
Length = 255
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 632 SSLYNKLDIITESQFFFTFSFRKMKEYLF 546
+S+ L I T+S FTF+ RKM EY F
Sbjct: 152 TSIAALLQIATDSDLVFTFNARKMGEYCF 180
>Z68493-10|CAA92797.2| 329|Caenorhabditis elegans Hypothetical
protein C33A12.14 protein.
Length = 329
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 197 WFACSTIISHFKFHRVTYFKMFSITTELTEVEKKTGLPLTALYETIRMEKFFNNAGLS 24
W ACS + + F ++T + IT +++ + + + +T Y TI M F+ GL+
Sbjct: 213 WLACSVLANLILFLKLTRAREQLITQQVSSISYRAQVSIT--YTTIAMIVFYVTNGLT 268
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 659 CYMPTSWPISSLYNKLDIITESQFF 585
CY+P SWP + N D+++ +QF+
Sbjct: 279 CYLPNSWPAYDI-NMKDVVSFAQFY 302
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 33 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYD 179
G++ K+L +YGF+ +FF S G+ H ++GD V E Y+
Sbjct: 106 GVVTKMLDTYGFV-----DDDVFFQHSVIRGS--HPRVGDKVMVEANYN 147
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 33 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYD 179
G++ K+L +YGF+ +FF S G+ H ++GD V E Y+
Sbjct: 106 GVVTKMLDTYGFV-----DDDVFFQHSVIRGS--HPRVGDKVMVEANYN 147
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 33 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYD 179
G++ K+L +YGF+ +FF S G+ H ++GD V E Y+
Sbjct: 106 GVVTKMLDTYGFV-----DDDVFFQHSVIRGS--HPRVGDKVMVEANYN 147
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 33 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYD 179
G++ K+L +YGF+ +FF S G+ H ++GD V E Y+
Sbjct: 106 GVVTKMLDTYGFV-----DDDVFFQHSVIRGS--HPRVGDKVMVEANYN 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,612
Number of Sequences: 27780
Number of extensions: 328414
Number of successful extensions: 796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -