Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060617.seq
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 318 IGYSTCIITRSFTFYFCCYSALTLXRLI 235
           IGY+TC+++     Y+    A  L  L+
Sbjct: 100 IGYATCVLSCWTNIYYIIILAWALFYLL 127


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 318 IGYSTCIITRSFTFYFCCYSALTLXRLI 235
           IGY+TC+++     Y+    A  L  L+
Sbjct: 153 IGYATCVLSCWTNIYYIIILAWALFYLL 180


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 113 TEVEKKTGLPLTALYETIRMEKFFN-NAGLSNR 18
           ++ E+K G      Y+T+ +EK F+ N  L+ R
Sbjct: 266 SQFERKRGRQTYTRYQTLELEKEFHYNRYLTRR 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,798
Number of Sequences: 438
Number of extensions: 3617
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)