Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060617.seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa...    29   2.9  
At1g43000.1 68414.m04950 zinc-binding family protein similar to ...    28   5.0  
At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa...    28   6.6  
At4g30990.1 68417.m04398 expressed protein ; expression supporte...    28   6.6  
At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protei...    28   6.6  
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P...    27   8.8  

>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 472

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 676 TWXLSNVTCPLLGPFLVCIINSTSSPRVNSSLHLVSE 566
           TW LS+ TCPL    L+  ++S   PR  SS  LV E
Sbjct: 164 TWLLSHSTCPLCRSSLLSDLSSHQDPR--SSFLLVLE 198


>At1g43000.1 68414.m04950 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 216

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 212 DC*CNWFACSTIISHFKFHRVTYFKMFSI--TTELTEVEKKTGLPLTALYETIRMEKFFN 39
           DC  N F CS+ ++H + HRV   +  S      ++E++K   +     Y     + FF 
Sbjct: 41  DCSGNAF-CSSCLAHHRTHRVIQIRRSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFL 99

Query: 38  NA 33
           NA
Sbjct: 100 NA 101


>At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 362

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -2

Query: 676 TWXLSNVTCPLLGPFLVCIINSTSSPRVNSSLHLVSEK*KNISFTTSARSIKPKFSSWSR 497
           TW  S+  CPL   F+  + N T+S   N S+ +V+ +  +   T S   I    + +  
Sbjct: 172 TWLKSHSNCPLCRAFVTGVNNPTASVGQNVSV-VVANQSNSAHQTGSVSEINLNLAGYES 230

Query: 496 QLHD 485
           Q  D
Sbjct: 231 QTGD 234


>At4g30990.1 68417.m04398 expressed protein ; expression supported by
            MPSS
          Length = 2138

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 613  STSSPRVNSSLHLVSEK*KNISFTTSARSIK 521
            S+SSP V S L L++   KNI+ T S+  +K
Sbjct: 1906 SSSSPLVQSCLKLLTTLLKNINITLSSEQLK 1936


>At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protein
           contains Pfam profiles: PF01411 tRNA synthetases class
           II (A), PF02272 DHHA1 domain
          Length = 1003

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 21  IRETGIIEKLLHSYGFIQCCERQ--ARLFFHFSQFSGNTEHLKIGDPVEFEMTYDRR 185
           I +TG+IE    S+G    C  Q       H    S  T  + +GD V  ++ Y+RR
Sbjct: 586 IFDTGLIEG---SFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERR 639


>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
            At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
            At1g25886, At4g03300
          Length = 1314

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 623  YNKLDIITESQFFFTFSFRKMKEYLFYNIGT 531
            YN LD++  S+    F FRK+    F N+ T
Sbjct: 940  YNPLDMVDPSKIHTLFGFRKVPNEFFANLLT 970


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,575,555
Number of Sequences: 28952
Number of extensions: 295499
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)