Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060616.seq
(633 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 177 1e-43
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 140 2e-32
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 139 4e-32
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 136 3e-31
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 136 5e-31
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 135 1e-30
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 134 1e-30
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 133 3e-30
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 132 9e-30
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 131 2e-29
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 127 2e-28
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 127 3e-28
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 124 1e-27
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 110 2e-23
UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physali... 78 2e-13
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 64 3e-09
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 64 3e-09
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 62 1e-08
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 59 8e-08
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 57 3e-07
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 57 4e-07
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 57 4e-07
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 56 5e-07
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 56 7e-07
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 56 9e-07
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 56 9e-07
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 56 9e-07
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 56 9e-07
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 55 1e-06
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 55 1e-06
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 55 1e-06
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 55 2e-06
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 54 4e-06
UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po... 53 7e-06
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 53 7e-06
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 53 7e-06
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 53 7e-06
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 52 1e-05
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 52 2e-05
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 52 2e-05
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 52 2e-05
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 51 2e-05
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 51 2e-05
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 50 4e-05
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 50 4e-05
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 50 4e-05
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 50 5e-05
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 50 5e-05
UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei... 50 5e-05
UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)... 50 5e-05
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 50 6e-05
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 48 1e-04
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 47 3e-04
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 47 3e-04
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 47 3e-04
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 47 3e-04
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 46 0.001
UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep: Rep... 45 0.001
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 41 0.028
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 36 1.1
UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root... 35 1.4
UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic v... 35 1.9
UniRef50_A7NVU4 Cluster: Chromosome chr18 scaffold_1, whole geno... 35 1.9
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 35 1.9
UniRef50_Q6QLN1 Cluster: Non-structural polyprotein; n=40; root|... 34 2.5
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 34 3.3
UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis... 33 4.3
UniRef50_Q5VI74 Cluster: RNA-dependent RNA polymerase; n=1; Frag... 33 5.7
UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep: ... 33 5.7
UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1; ... 33 5.7
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 177 bits (432), Expect = 1e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN
Sbjct: 1487 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 1546
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYNIAVIYSEYDITTQTVFVS
Sbjct: 1547 TDYNIAVIYSEYDITTQTVFVS 1568
Score = 137 bits (332), Expect = 2e-31
Identities = 68/95 (71%), Positives = 68/95 (71%)
Frame = +2
Query: 287 AHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKI 466
AHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIR DDRTLPDKI
Sbjct: 1580 AHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRALLAKLVLALDDRTLPDKI 1639
Query: 467 ASYLSEFVVGHSLGTLSGLSWPADQVXLSXRAF*F 571
ASYLSEFVVGHSLG PADQV F F
Sbjct: 1640 ASYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDF 1674
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +3
Query: 549 YQXALFDFFCRECSXXQXLALKIGE 623
YQ ALFDFFCRECS Q LALKIGE
Sbjct: 1667 YQSALFDFFCRECSKEQKLALKIGE 1691
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 140 bits (340), Expect = 2e-32
Identities = 61/82 (74%), Positives = 74/82 (90%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGE+VVLE KM+RL+IPSHLI LH ++KTN+++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1581 AFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDN 1640
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYN+AVIYS+YD+ + + VS
Sbjct: 1641 TDYNLAVIYSQYDVGSCPIMVS 1662
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/71 (46%), Positives = 38/71 (53%)
Frame = +2
Query: 296 DWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIASY 475
DW +V L L FK E + LFCGYY+GPAG IR DD L D+ SY
Sbjct: 1677 DWPSVLKRLHLRFKLELTSHPLFCGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSY 1736
Query: 476 LSEFVVGHSLG 508
L+EF GH LG
Sbjct: 1737 LTEFTTGHLLG 1747
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 139 bits (337), Expect = 4e-32
Identities = 61/82 (74%), Positives = 73/82 (89%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
+FDQSQHGEAVV ERKKMERL+IPSHLIDLH ++KTN+++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1589 SFDQSQHGEAVVFERKKMERLNIPSHLIDLHIHLKTNVSTQFGPLTCMRLTGEPGTYDDN 1648
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYN+AV++ EY + + VS
Sbjct: 1649 TDYNLAVLHLEYLVGSTPCMVS 1670
Score = 79.8 bits (188), Expect = 5e-14
Identities = 41/94 (43%), Positives = 49/94 (52%)
Frame = +2
Query: 290 HPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIA 469
+P W AV PLL+L FKKE R G FCGYY+G G IR DD T+ +K+
Sbjct: 1683 NPIWQAVKPLLALRFKKERTRYGEFCGYYVGCEGCIRSPMALFAKLMVCVDDGTIEEKMI 1742
Query: 470 SYLSEFVVGHSLGTLSGLSWPADQVXLSXRAF*F 571
SY +EF +GHSLG P D V F F
Sbjct: 1743 SYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDF 1776
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 136 bits (330), Expect = 3e-31
Identities = 60/82 (73%), Positives = 71/82 (86%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGEAVV ER KM RLSIP+ L+DLH Y+KTN+++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1516 AFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTGEPGTYDDN 1575
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYNIAV++ EY + + + VS
Sbjct: 1576 TDYNIAVLHLEYAVGSTPLMVS 1597
Score = 77.0 bits (181), Expect = 4e-13
Identities = 37/91 (40%), Positives = 49/91 (53%)
Frame = +2
Query: 299 WDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIASYL 478
W A++P+L+LTFKKE R FCGYY+G GA+R DD ++ DK+ +YL
Sbjct: 1613 WSAIAPMLALTFKKERGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYL 1672
Query: 479 SEFVVGHSLGTLSGLSWPADQVXLSXRAF*F 571
+EF VGHS G P + V F F
Sbjct: 1673 TEFTVGHSSGDAFWTILPVEAVPYQSACFDF 1703
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 136 bits (328), Expect = 5e-31
Identities = 58/82 (70%), Positives = 70/82 (85%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
+FDQSQHGEAV+ E KM R+ IP HLIDLH Y+KTN+++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1506 SFDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNVSTQFGPLTCMRLTGEPGTYDDN 1565
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYN+AVI+S+Y I+ + VS
Sbjct: 1566 TDYNLAVIFSQYVISDHPIMVS 1587
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/81 (40%), Positives = 41/81 (50%)
Frame = +2
Query: 290 HPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIA 469
+P+W AV LL L FK E LFCGYY+GP G R D L + +
Sbjct: 1600 NPNWPAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNPFALFAKLMISYDKGNLFETLP 1659
Query: 470 SYLSEFVVGHSLGTLSGLSWP 532
SYL EF +GH LG + L +P
Sbjct: 1660 SYLYEFSIGHRLGDVVRLLFP 1680
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 135 bits (326), Expect = 1e-30
Identities = 59/82 (71%), Positives = 72/82 (87%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGE+V+LE KM+RLSIPSHLI LH ++KTN+ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1610 AFDQSQHGESVILEALKMKRLSIPSHLIQLHVHLKTNVATQFGPLTCMRLTGEPGTYDDN 1669
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
+DYN+AVI+S++D+ V VS
Sbjct: 1670 SDYNLAVIHSQFDMKDIPVMVS 1691
Score = 65.7 bits (153), Expect = 9e-10
Identities = 32/70 (45%), Positives = 37/70 (52%)
Frame = +2
Query: 299 WDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIASYL 478
W+A LL L FK E + LFCGYY G AGAIR DD + D+ SYL
Sbjct: 1707 WEATKRLLHLRFKTEKTTHPLFCGYYTGSAGAIRNPLALFSKLMIAIDDEAIHDRRLSYL 1766
Query: 479 SEFVVGHSLG 508
+EF GH LG
Sbjct: 1767 TEFSTGHQLG 1776
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 134 bits (325), Expect = 1e-30
Identities = 60/72 (83%), Positives = 66/72 (91%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGEAVVLERKKMERLSIP HLI LH ++KT++ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1557 AFDQSQHGEAVVLERKKMERLSIPDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYDDN 1616
Query: 189 TDYNIAVIYSEY 224
TDYN+AVI EY
Sbjct: 1617 TDYNLAVINLEY 1628
Score = 74.1 bits (174), Expect = 2e-12
Identities = 37/93 (39%), Positives = 46/93 (49%)
Frame = +2
Query: 293 PDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIAS 472
P+W A+ PLL+L FKKE FCGYY G +R DD ++ DK+A+
Sbjct: 1652 PEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKLAIAVDDSSISDKLAA 1711
Query: 473 YLSEFVVGHSLGTLSGLSWPADQVXLSXRAF*F 571
YL EF VGHSLG + P V F F
Sbjct: 1712 YLMEFAVGHSLGDSLWSALPLSAVPFQSACFDF 1744
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 133 bits (322), Expect = 3e-30
Identities = 61/82 (74%), Positives = 69/82 (84%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGEAVVLERKKMERLSIP LIDLH ++KT++++QFGPLTCMRLTGEPGTYDDN
Sbjct: 1695 AFDQSQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDN 1754
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
+DYN+AVI EY VS
Sbjct: 1755 SDYNLAVINCEYMAANTPTMVS 1776
Score = 76.6 bits (180), Expect = 5e-13
Identities = 39/93 (41%), Positives = 48/93 (51%)
Frame = +2
Query: 293 PDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIAS 472
P+W + PLLSL FKKE R FCGYY G +R DD ++ DK+AS
Sbjct: 1790 PEWVILQPLLSLRFKKERGRYATFCGYYASHVGCVRSPVALFAKLAIAVDDGSISDKMAS 1849
Query: 473 YLSEFVVGHSLGTLSGLSWPADQVXLSXRAF*F 571
YLSEF +GHSLG + P + V F F
Sbjct: 1850 YLSEFALGHSLGDHLWEALPLEAVPFQSACFDF 1882
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 132 bits (318), Expect = 9e-30
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGEAVV E KM RLSIP LI+LH Y+K N+ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1513 AFDQSQHGEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDN 1572
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYN+AVIYS+Y + + VS
Sbjct: 1573 TDYNLAVIYSKYLVLDHPIMVS 1594
Score = 84.6 bits (200), Expect = 2e-15
Identities = 42/92 (45%), Positives = 53/92 (57%)
Frame = +2
Query: 296 DWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIASY 475
+W A+ LL+L FK E ++ LFCGYY+GPAGAIR DD ++ DK+ASY
Sbjct: 1609 NWPAIEKLLALRFKTESTKHPLFCGYYVGPAGAIRSPITLFAKIMSAVDDLSIDDKLASY 1668
Query: 476 LSEFVVGHSLGTLSGLSWPADQVXLSXRAF*F 571
LSEF +GHSLG P DQV + F
Sbjct: 1669 LSEFAIGHSLGHDFWDLLPIDQVPYQSAVYDF 1700
Score = 33.5 bits (73), Expect = 4.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 549 YQXALFDFFCRECSXXQXLALKIGE 623
YQ A++DFFCR S Q L IGE
Sbjct: 1693 YQSAVYDFFCRHASREQKQILNIGE 1717
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 131 bits (316), Expect = 2e-29
Identities = 58/82 (70%), Positives = 69/82 (84%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
+FDQSQHGEAVVLE KM+RL IP LI+LH ++KTN+ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1479 SFDQSQHGEAVVLEVLKMQRLQIPKELIELHVHLKTNVDTQFGPLTCMRLTGEPGTYDDN 1538
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYN+AVIYS+Y + + VS
Sbjct: 1539 TDYNLAVIYSQYSMGSTPCLVS 1560
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/73 (45%), Positives = 42/73 (57%)
Frame = +2
Query: 290 HPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIA 469
+P W+A+ LL L FK LFCGYY+ P GA+R DD ++P+K
Sbjct: 1573 NPAWNAIKNLLHLKFKTHCSAYPLFCGYYVSPVGAVRNPHALFAKLMIAHDDGSIPEKKL 1632
Query: 470 SYLSEFVVGHSLG 508
SYLSEF VGHS+G
Sbjct: 1633 SYLSEFSVGHSIG 1645
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 127 bits (307), Expect = 2e-28
Identities = 56/82 (68%), Positives = 67/82 (81%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGEAVVLE KM RLSIP LI LH ++K ++ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1576 AFDQSQHGEAVVLECLKMRRLSIPDSLIQLHSHLKCSVDTQFGPLTCMRLTGEPGTYDDN 1635
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
+DYN+AVIYS+Y + + +S
Sbjct: 1636 SDYNLAVIYSQYSLNGHPILIS 1657
Score = 63.3 bits (147), Expect = 5e-09
Identities = 32/74 (43%), Positives = 38/74 (51%)
Frame = +2
Query: 293 PDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIAS 472
P W + +L L FK E + LFCGYY+ P GA R DD++L DK S
Sbjct: 1671 PLWPTLKKMLHLRFKIERTSHPLFCGYYVSPHGAARNPYALFAKLMICVDDKSLHDKKLS 1730
Query: 473 YLSEFVVGHSLGTL 514
YLSEF GH G L
Sbjct: 1731 YLSEFSTGHLAGDL 1744
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 127 bits (306), Expect = 3e-28
Identities = 57/82 (69%), Positives = 66/82 (80%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGEAVV E KM RLSIP +LI LH ++KTN+ +QFGPLTCMRLTGEPGTYDDN
Sbjct: 1483 AFDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNVETQFGPLTCMRLTGEPGTYDDN 1542
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYN+AV+ +YD+ VS
Sbjct: 1543 TDYNLAVLNLQYDLRKTPTLVS 1564
Score = 68.9 bits (161), Expect = 9e-11
Identities = 36/90 (40%), Positives = 44/90 (48%)
Frame = +2
Query: 296 DWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIASY 475
+W V LL L K + +GLFCGYYLGP G IR DD + DK+ SY
Sbjct: 1579 NWPFVKELLHLRLKPSSLIDGLFCGYYLGPQGCIRNPLALFAKLMIAEDDGSAFDKLPSY 1638
Query: 476 LSEFVVGHSLGTLSGLSWPADQVXLSXRAF 565
L+EF +GH LG P+D V F
Sbjct: 1639 LTEFSIGHGLGDSLWQLLPSDLVLYQSACF 1668
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 124 bits (300), Expect = 1e-27
Identities = 56/82 (68%), Positives = 65/82 (79%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQHGEAVVLE KM R SIP I LH ++KTNI QFGPLTCMR+TGEPGTYDDN
Sbjct: 1691 AFDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLTCMRITGEPGTYDDN 1750
Query: 189 TDYNIAVIYSEYDITTQTVFVS 254
TDYN+A++Y++Y + V VS
Sbjct: 1751 TDYNLAILYTQYLLHRTPVLVS 1772
Score = 75.8 bits (178), Expect = 8e-13
Identities = 35/73 (47%), Positives = 47/73 (64%)
Frame = +2
Query: 290 HPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIA 469
+P W A++PL +L K E GLFCGY++GPAGA+R +D +LP+KIA
Sbjct: 1785 NPSWPALAPLFALKPKPETSPFGLFCGYFVGPAGAVRAPRALFAKLAIALEDGSLPEKIA 1844
Query: 470 SYLSEFVVGHSLG 508
SY++EF VG SLG
Sbjct: 1845 SYVAEFSVGQSLG 1857
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 110 bits (265), Expect = 2e-23
Identities = 50/72 (69%), Positives = 61/72 (84%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
A+DQSQ GEAVVLER KM R+SIP LIDLH ++KTN+ +Q GPLT MRLTGEPGTYDDN
Sbjct: 80 AYDQSQGGEAVVLERLKMLRVSIPQPLIDLHVHLKTNVDTQLGPLTSMRLTGEPGTYDDN 139
Query: 189 TDYNIAVIYSEY 224
+DYN+AV +++
Sbjct: 140 SDYNLAVTAAKF 151
Score = 86.6 bits (205), Expect = 4e-16
Identities = 45/93 (48%), Positives = 51/93 (54%)
Frame = +2
Query: 293 PDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIAS 472
P W + +LSL FK E R GLFCGYYLGPAGA+R DD ++ DK AS
Sbjct: 177 PTWPILEAMLSLRFKTEVSRYGLFCGYYLGPAGAVRSPLALFAKLIIAVDDGSIEDKKAS 236
Query: 473 YLSEFVVGHSLGTLSGLSWPADQVXLSXRAF*F 571
YLSEF VGHSLG P +QV F F
Sbjct: 237 YLSEFAVGHSLGQDMWTLLPENQVPYQSANFDF 269
Score = 35.1 bits (77), Expect = 1.4
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 549 YQXALFDFFCRECSXXQXLALKIG 620
YQ A FDFFCR C LAL+IG
Sbjct: 262 YQSANFDFFCRNCPPSWKLALRIG 285
>UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physalis
mottle virus|Rep: RNA replicase polyprotein - Physalis
mottle virus (PhMV) (Belladonna mottle virus-Iowa)
Length = 178
Score = 78.2 bits (184), Expect = 2e-13
Identities = 35/72 (48%), Positives = 43/72 (59%)
Frame = +2
Query: 293 PDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIAS 472
P+W A+ LL L FK E + LFCGYYL PAG IR DD +LP+K+ S
Sbjct: 10 PNWPAIKDLLHLKFKTEITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDDMSLPEKVLS 69
Query: 473 YLSEFVVGHSLG 508
YLSE +GH+LG
Sbjct: 70 YLSEVSIGHNLG 81
Score = 32.7 bits (71), Expect = 7.5
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 549 YQXALFDFFCRECSXXQXLAL 611
YQ A FDFFCR C+ Q L L
Sbjct: 95 YQSACFDFFCRNCTPSQKLLL 115
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/81 (43%), Positives = 46/81 (56%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + IP +I + IKTN G L+ MRLTGE T+D N
Sbjct: 1245 AFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAHIFLGTLSIMRLTGEGPTFDAN 1304
Query: 189 TDYNIAVIYSEYDITTQTVFV 251
T+ NIA ++++DI T V
Sbjct: 1305 TECNIAYTHTKFDIPAGTAQV 1325
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 64.1 bits (149), Expect = 3e-09
Identities = 34/78 (43%), Positives = 45/78 (57%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K SIP ++D + IKTN G L MRLTGE T+D N
Sbjct: 1333 AFDQSQDGAMLQFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDAN 1392
Query: 189 TDYNIAVIYSEYDITTQT 242
T+ NIA +++++I T
Sbjct: 1393 TECNIAFTHTKFNIPEGT 1410
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/74 (43%), Positives = 43/74 (58%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
A+D SQ V E M RL P +I+ + +K +ITS FGPL MR +GE TY N
Sbjct: 1677 AYDASQDATFVNFETLLMRRLDFPLDIIEAYVEMKASITSHFGPLAIMRFSGEVWTYLFN 1736
Query: 189 TDYNIAVIYSEYDI 230
T NIA Y++Y++
Sbjct: 1737 TLGNIAFTYAKYEV 1750
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 59.3 bits (137), Expect = 8e-08
Identities = 33/81 (40%), Positives = 46/81 (56%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + +IP+ +I+ + YIK N G L MRL+GE T+D N
Sbjct: 1381 AFDQSQDGAMLQFEVIKAKFFNIPAEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTFDAN 1440
Query: 189 TDYNIAVIYSEYDITTQTVFV 251
T+ +IA + + IT T V
Sbjct: 1441 TECSIAYNATRFHITDDTAQV 1461
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + +IP+ +I+ + YIK N G L MRL+GE T+D N
Sbjct: 1341 AFDQSQDGAMLQFEVMKAKFFNIPADIIEGYIYIKLNAVIFLGTLGIMRLSGEGPTFDAN 1400
Query: 189 TDYNIAVIYSEYDITTQTVFV 251
T+ +IA + + I T V
Sbjct: 1401 TECSIAYNATRFHIEDDTAQV 1421
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 56.8 bits (131), Expect = 4e-07
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + +IP +I+ + IKT+ G L+ MRL+GE T+D N
Sbjct: 1080 AFDQSQDGSILQFEVIKAKFHNIPEDVIEGYIQIKTHAKIFLGTLSIMRLSGEGPTFDAN 1139
Query: 189 TDYNIAVIYSEYDI 230
T+ NIA +++++I
Sbjct: 1140 TEANIAYTHTKFNI 1153
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 56.8 bits (131), Expect = 4e-07
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + ++P +I+ + IK + G L+ MRLTGE T+D N
Sbjct: 1173 AFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDAN 1232
Query: 189 TDYNIAVIYSEYDITTQT 242
T+ NIA ++ +DI T
Sbjct: 1233 TECNIAYTHTRFDIPEGT 1250
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 56.4 bits (130), Expect = 5e-07
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + +P+ +I+ + +IK N G L MRL+GE T+D N
Sbjct: 1300 AFDQSQDGAMLQFEVIKAKHYGVPADIIEGYLHIKMNAKIFLGTLAIMRLSGEGPTFDAN 1359
Query: 189 TDYNIAVIYSEYDITTQT 242
T+ +IA ++ + + + T
Sbjct: 1360 TECSIAYHHTRFHVPSNT 1377
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 56.0 bits (129), Expect = 7e-07
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
A+DQSQ G + E K +P+ LI+ + +K N G L MRLTGE T+D N
Sbjct: 1145 AYDQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDAN 1204
Query: 189 TDYNIAVIYSEYDITTQT 242
T+ NIA ++ + I T
Sbjct: 1205 TECNIAYTHARFHIPRGT 1222
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 55.6 bits (128), Expect = 9e-07
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + + E M R+++P ID + ++K N+ S+ G + MR TGE T+ N
Sbjct: 1552 AFDASQDSQILAFEVAIMRRMNMPQEFIDDYVWLKCNLRSKLGNMAIMRFTGEAATFLFN 1611
Query: 189 TDYNIAVIYSEYDI 230
T NI YD+
Sbjct: 1612 TMANIVFTIMAYDL 1625
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 55.6 bits (128), Expect = 9e-07
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQF--GPLTCMRLTGEPGTYD 182
AFD SQ G V ER E L +P LID Y+ T I S G ++ MRL+GE TYD
Sbjct: 1378 AFDASQDGAFVEFERLHAEFLGVPRELIDF--YVDTKIKSYIWRGTISVMRLSGEGPTYD 1435
Query: 183 DNTDYNIAVIYSEYDI 230
NT N+A + ++Y I
Sbjct: 1436 FNTWANMAFMATKYSI 1451
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 55.6 bits (128), Expect = 9e-07
Identities = 25/65 (38%), Positives = 38/65 (58%)
Frame = +3
Query: 12 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNT 191
+DQSQ + E +K +P ++D + +IKT+ + G L MRL+GE T+D NT
Sbjct: 1266 YDQSQDAAFLNFELRKARHFGVPEEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPTFDANT 1325
Query: 192 DYNIA 206
+ NIA
Sbjct: 1326 ECNIA 1330
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 55.6 bits (128), Expect = 9e-07
Identities = 30/74 (40%), Positives = 40/74 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E K ME L IP LI + YIKT++ S+ G MR +GE T+ N
Sbjct: 1764 AFDASQDQYIMAFELKVMEYLGIPKDLIADYVYIKTHLGSKLGNFAIMRYSGEASTFLFN 1823
Query: 189 TDYNIAVIYSEYDI 230
T N+ + YD+
Sbjct: 1824 TMANMLFTFLRYDV 1837
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + +IP+ +I+ + IK N G L+ MRL+GE T+D N
Sbjct: 1224 AFDQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDAN 1283
Query: 189 TDYNIAVIYSEY--DITTQTVF 248
T+ +IA + Y D T + V+
Sbjct: 1284 TECSIAYTATRYHLDSTVKQVY 1305
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 55.2 bits (127), Expect = 1e-06
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + +IPS +I+ + +KTN G L MRL+GE T+D N
Sbjct: 1113 AFDQSQDGAMLQFEVIKAKFHNIPSDIINSYVELKTNAKVFLGVLKIMRLSGEGPTFDAN 1172
Query: 189 TDYNIAVIYSEY 224
T+ +IA +++Y
Sbjct: 1173 TECSIAYHHTKY 1184
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
A+DQSQ G + E K IP +++ + +K N G L MRLTGE T+D N
Sbjct: 1111 AYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTGEGPTFDAN 1170
Query: 189 TDYNIAVIYSEYDI 230
T+ NIA ++ ++I
Sbjct: 1171 TECNIAYTHARFEI 1184
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 54.8 bits (126), Expect = 2e-06
Identities = 31/74 (41%), Positives = 42/74 (56%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + +IP +I + IKTN G L MRLTGE T+D N
Sbjct: 1282 AFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDAN 1341
Query: 189 TDYNIAVIYSEYDI 230
T+ NIA + +++
Sbjct: 1342 TECNIAYTHLRFNV 1355
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 53.6 bits (123), Expect = 4e-06
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E ME L +P LI+ + YIKT++ S+ G + MR +GE T+ N
Sbjct: 1880 AFDASQDAYILAFEICLMEHLCLPRDLIEDYKYIKTHLGSKLGNFSIMRFSGEASTFLFN 1939
Query: 189 TDYNIAVIYSEYDI 230
T N+ + +YD+
Sbjct: 1940 TIANMLFTFLKYDL 1953
>UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6;
Potexvirus|Rep: Replication-associated protein -
Schlumbergera virus X
Length = 377
Score = 52.8 bits (121), Expect = 7e-06
Identities = 32/78 (41%), Positives = 41/78 (52%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K SIP ID + +K + G L MRLTGE T+D N
Sbjct: 170 AFDQSQDGAMLQFEILKARHHSIPDVYIDGYVELKCCSKTFLGVLKIMRLTGEGPTFDAN 229
Query: 189 TDYNIAVIYSEYDITTQT 242
T+ NIA +++ I T
Sbjct: 230 TECNIAFAHTKLKIPIGT 247
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 52.8 bits (121), Expect = 7e-06
Identities = 27/74 (36%), Positives = 41/74 (55%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E M+ L +P+ LI+ + YIKT++ S+ G MR +GE T+ N
Sbjct: 1783 AFDASQDQYIMAFELAVMKHLRLPADLIEDYKYIKTHLGSKLGSFAIMRFSGEASTFLFN 1842
Query: 189 TDYNIAVIYSEYDI 230
T N+ + YD+
Sbjct: 1843 TMANMLFTFMRYDM 1856
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 52.8 bits (121), Expect = 7e-06
Identities = 29/74 (39%), Positives = 40/74 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ V E ME L +P LI+ + YIKT++ S+ G MR +GE T+ N
Sbjct: 1796 AFDASQDQYIVGFELAVMEYLGLPRDLINDYIYIKTHLGSKLGSFAIMRFSGEASTFLFN 1855
Query: 189 TDYNIAVIYSEYDI 230
T N+ + Y+I
Sbjct: 1856 TMANMLFTFLRYEI 1869
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 52.8 bits (121), Expect = 7e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Frame = +3
Query: 12 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNT 191
+DQSQ + E +K L +P ++ + +IKT+ + G L MRL+GE T+D NT
Sbjct: 1341 YDQSQDAPFLNFELRKARHLGVPDEVLSFYKFIKTHAKTFVGNLAIMRLSGEGPTFDANT 1400
Query: 192 DYNIA 206
+ NIA
Sbjct: 1401 ECNIA 1405
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 52.0 bits (119), Expect = 1e-05
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E M+ L +P+ LI+ + YIK ++ S+ G MR TGE T+ N
Sbjct: 1725 AFDASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEASTFLFN 1784
Query: 189 TDYNIAVIYSEYDI 230
T N+ + YDI
Sbjct: 1785 TMANMLFTFLVYDI 1798
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 51.6 bits (118), Expect = 2e-05
Identities = 29/74 (39%), Positives = 41/74 (55%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K + ++P +I+ + IK G L MRLTGE T+D N
Sbjct: 1149 AFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDAN 1208
Query: 189 TDYNIAVIYSEYDI 230
T+ NIA ++ + I
Sbjct: 1209 TECNIAYTHTRFHI 1222
>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
Phlox virus S
Length = 1990
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ V E ME L +P LI+ + +IKT++ S+ G MR +GE T+ N
Sbjct: 1780 AFDASQDQYMVAFEVAVMEYLGLPRDLIEDYKFIKTHLGSKLGNFAIMRFSGEASTFLFN 1839
Query: 189 TDYNIAVIYSEYDI 230
T N+ + +Y+I
Sbjct: 1840 TMANMLFTFLKYEI 1853
>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
symptomless virus|Rep: RNA-dependent RNA polymerase -
Narcissus symptomless virus
Length = 1871
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E M+ L +P L++ + +IKT++ S+ G MR +GE T+ N
Sbjct: 1664 AFDASQDHYIMAFEVAVMKYLGLPRDLVNDYIFIKTHLGSKLGSFAIMRFSGEASTFLFN 1723
Query: 189 TDYNIAVIYSEYDIT 233
T N+ + +Y+IT
Sbjct: 1724 TMSNMLFTFMKYEIT 1738
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E ME L +P LI+ + YIKT++ + G L MR +GE T+ N
Sbjct: 1714 AFDASQDQYIMAFEIALMEFLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEASTFLFN 1773
Query: 189 TDYNIAVIYSEYDI 230
T N+ + YD+
Sbjct: 1774 TLANMLFTFLRYDL 1787
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/74 (37%), Positives = 38/74 (51%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ V E M L +P L+ + YIKT++ S+ G MR +GE T+ N
Sbjct: 1761 AFDASQDQYIVAFEVAVMNYLGLPRDLVRDYLYIKTHLGSKLGNFAIMRFSGEASTFLFN 1820
Query: 189 TDYNIAVIYSEYDI 230
T N+ + YDI
Sbjct: 1821 TMANMLFTFLRYDI 1834
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 50.4 bits (115), Expect = 4e-05
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E M L++P LI+ + ++K N S+ G MR TGE GT+ N
Sbjct: 1820 AFDSSQDANILAFEVSLMNYLNLPRDLIEDYKHLKFNTHSKLGRFAVMRFTGEAGTFLFN 1879
Query: 189 TDYNIAVIYSEYD 227
T N+ + Y+
Sbjct: 1880 TLANMVFTFMRYE 1892
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E + M+ L +P LI + +IKT++ S+ G MR TGE T+ N
Sbjct: 1972 AFDASQDHFILAFELEVMKFLGLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEASTFLFN 2031
Query: 189 TDYNIAVIYSEYDI 230
T N+ + YD+
Sbjct: 2032 TMANMLFTFLRYDL 2045
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E + M+ L +PS LI+ + +IKT++ S+ G MR +GE T+ N
Sbjct: 1758 AFDASQDEFIMAFELELMKYLRLPSDLIEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFN 1817
Query: 189 TDYNIAVIYSEYDI 230
T N+ + Y+I
Sbjct: 1818 TLANMLFTFMRYNI 1831
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 50.0 bits (114), Expect = 5e-05
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ G + E K IP I+ + +K + + G L MRLTGE T+D N
Sbjct: 1348 AFDQSQDGAMLQFEVLKARHHCIPEEFIEGYIDLKCSSKTFLGILKIMRLTGEGPTFDAN 1407
Query: 189 TDYNIAVIYS 218
T+ NIA ++
Sbjct: 1408 TECNIAFAHT 1417
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 50.0 bits (114), Expect = 5e-05
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +3
Query: 12 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNT 191
+DQSQ + E +K L +P ++ + +IKT+ + G L MRL+ E T+D NT
Sbjct: 1423 YDQSQDAAFLNFEIRKARHLGVPEDVLSFYKFIKTHAKTFLGNLAIMRLSAEGPTFDANT 1482
Query: 192 DYNIA 206
+ NIA
Sbjct: 1483 ECNIA 1487
>UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20;
Carlavirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Potato virus S (strain Peruvian)
Length = 353
Score = 50.0 bits (114), Expect = 5e-05
Identities = 27/74 (36%), Positives = 39/74 (52%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ V E M L +P+ LI+ + YIKT++ S+ G MR +GE T+ N
Sbjct: 146 AFDASQDQYIVAFELALMRYLGLPNDLIEDYKYIKTHLGSKLGNFAIMRFSGEASTFLFN 205
Query: 189 TDYNIAVIYSEYDI 230
T N+ + Y +
Sbjct: 206 TMANMLFTFLRYKL 219
>UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)
[Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
Helicase (EC 3.6.1.-)]; n=17; Chrysanthemum virus B|Rep:
RNA replication protein (ORF 1 protein) [Includes:
RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC
3.6.1.-)] - Chrysanthemum virus B (CVB)
Length = 260
Score = 50.0 bits (114), Expect = 5e-05
Identities = 27/74 (36%), Positives = 39/74 (52%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ V E ME L +P LI+ + +IK ++ S+ G MR +GE T+ N
Sbjct: 49 AFDASQDQYIVAFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFN 108
Query: 189 TDYNIAVIYSEYDI 230
T N+ + Y+I
Sbjct: 109 TMANMLFTFLRYNI 122
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 49.6 bits (113), Expect = 6e-05
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E + M L +P LI+ + YIKT++ S+ G MR +GE T+ N
Sbjct: 1756 AFDASQDEYIMAFELELMNFLGLPHDLIEDYKYIKTSLGSKLGNFAIMRFSGEASTFLFN 1815
Query: 189 TDYNIAVIYSEYDI 230
T N+ + Y++
Sbjct: 1816 TLANMLFTFLRYEV 1829
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 48.4 bits (110), Expect = 1e-04
Identities = 28/74 (37%), Positives = 39/74 (52%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ + E K +IP +I+ + IK G L+ MRL+GE T+D N
Sbjct: 1174 AFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSGEGPTFDAN 1233
Query: 189 TDYNIAVIYSEYDI 230
T+ +IA + Y I
Sbjct: 1234 TECSIAYNATRYHI 1247
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 47.2 bits (107), Expect = 3e-04
Identities = 26/72 (36%), Positives = 40/72 (55%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFDQSQ + E K + SIP +I + ++K + G + MRL+GE T+D N
Sbjct: 1446 AFDQSQDANMLQFELIKAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMRLSGEGPTFDAN 1505
Query: 189 TDYNIAVIYSEY 224
T+ +IA ++ Y
Sbjct: 1506 TECSIAYNHTRY 1517
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 47.2 bits (107), Expect = 3e-04
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
A+D+S GE + E M +IP +I+LH + +TS G L MR +G+ TY N
Sbjct: 1332 AYDKSCRGETLAFEICIMRLFNIPEWIIELHVELTLCVTSALGKLGIMRTSGQWCTYLFN 1391
Query: 189 TDYNIAVIYSEY 224
T YN A +Y
Sbjct: 1392 TWYNDAYFTLKY 1403
Score = 33.1 bits (72), Expect = 5.7
Identities = 24/82 (29%), Positives = 32/82 (39%)
Frame = +2
Query: 293 PDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIAS 472
P W ++S SL K FCG+ L G IR ++ TL + + S
Sbjct: 1428 PGWLSISRYFSLVGKPVITFLPEFCGWLLTSHGIIRHPYLLYAKYLFHKENGTLANVLIS 1487
Query: 473 YLSEFVVGHSLGTLSGLSWPAD 538
Y EF +LG S P D
Sbjct: 1488 YYMEFQHSLTLGDALWESLPYD 1509
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 47.2 bits (107), Expect = 3e-04
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +3
Query: 12 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNT 191
+D+SQ G + E +K +P ++D + IKT+ L MRL+GE T+D NT
Sbjct: 1153 YDKSQDGLFLNFELRKARHFGVPQAVLDAYTAIKTDAKVFADTLKIMRLSGEGPTFDANT 1212
Query: 192 DYNIAVIYSEYDIT 233
+ NIA + + ++
Sbjct: 1213 ECNIAYDAARFQLS 1226
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 47.2 bits (107), Expect = 3e-04
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E + M+ L +P LI + +IK ++ S+ G + MR TGE T+ N
Sbjct: 1953 AFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEASTFLFN 2012
Query: 189 TDYNIAVIYSEYDIT 233
T N+ + Y++T
Sbjct: 2013 TMANMLFTFLRYELT 2027
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +3
Query: 6 RAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDD 185
+A+D SQ + E K + L+ + LI+ + Y+K ++ + G L +R TGE T+
Sbjct: 1425 KAYDASQDSCTLAFEYKLLRYLAFSNSLIEDYLYLKMHLNCKLGNLAIIRFTGEFCTFLF 1484
Query: 186 NTDYNIAVIYSEYDI 230
NT N+ + +YD+
Sbjct: 1485 NTLTNMLFTFMKYDV 1499
>UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep:
Replicase - Potato virus T
Length = 248
Score = 45.2 bits (102), Expect = 0.001
Identities = 29/79 (36%), Positives = 41/79 (51%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD+SQ + LE + ++ LID + +K + + G + MR TGE GT+ N
Sbjct: 13 AFDRSQDAIILGLEIECLKLFGWDQDLIDDYRKLKLWMGCRLGAIAIMRFTGEFGTFFFN 72
Query: 189 TDYNIAVIYSEYDITTQTV 245
T NIA Y+IT TV
Sbjct: 73 TIANIAFTCLRYNITRDTV 91
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 40.7 bits (91), Expect = 0.028
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD+SQ + + E + ++ P LI+ + +K + G L MR +GE GT+ N
Sbjct: 268 AFDRSQDEKILSFEVEVLKFFLWPEELINEYVTLKLMMGCSMGDLAIMRFSGEFGTFFFN 327
Query: 189 TDYNIAVIYSEYDITTQT 242
T N+ Y IT T
Sbjct: 328 TICNMVFTCMRYCITKDT 345
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 35.5 bits (78), Expect = 1.1
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD+SQ + + LE + + P LI + +K + G L MR +GE GT+ N
Sbjct: 1478 AFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGDLAVMRFSGEFGTFFFN 1537
Query: 189 TDYNIAVIYSEYDITTQT 242
T N+ Y + T
Sbjct: 1538 TICNMVFSCMRYHMDRNT 1555
>UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root|Rep:
Non-structural polyprotein - Hepatitis E virus (strain
Myanmar) (HEV)
Length = 1693
Score = 35.1 bits (77), Expect = 1.4
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 12 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMR-----LTGEPGT 176
FD +Q+ ++ LE ME +P LI L+ I++ Q P +R +GEPGT
Sbjct: 1464 FDSTQNNFSLGLECAIMEECGMPQWLIRLYHLIRSAWILQ-APKESLRGFWKKHSGEPGT 1522
Query: 177 YDDNTDYNIAVIYSEYD 227
NT +N+AVI YD
Sbjct: 1523 LLWNTVWNMAVITHCYD 1539
>UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic
virus|Rep: 27 kDa protein - White ash mosaic virus
Length = 243
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 111 KTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT 233
K N + G L MRLTGE T+D NT+ NIA + +T
Sbjct: 34 KCNARTFAGKLAIMRLTGEGPTFDANTECNIAYDALRFKLT 74
>UniRef50_A7NVU4 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=9; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 512
Score = 34.7 bits (76), Expect = 1.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 75 IPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSE 221
IPS +D+ +I+ + ++GPL C L G P + D+N + E
Sbjct: 87 IPSKSLDVSSFIRKRM-KKYGPLFCTNLVGRPVVVSSDPDFNYYIFQQE 134
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 323 SLTFKKEFVRNGLFCGYYLGPAGAIRXXXXXXXXXXXXXDDRTLPDKIASYLSEFVVGHS 502
SLT +E + +FCG+YL P G I+ + + L + + +YL E + +
Sbjct: 1476 SLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYR 1535
Query: 503 LG 508
LG
Sbjct: 1536 LG 1537
>UniRef50_Q6QLN1 Cluster: Non-structural polyprotein; n=40; root|Rep:
Non-structural polyprotein - Avian hepatitis E virus
Length = 1531
Score = 34.3 bits (75), Expect = 2.5
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 12 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTN---ITSQFGPLTCMRL-TGEPGTY 179
FD +Q+ ++ LE + M R +P ++ L+ +++ + + C + +GEPGT
Sbjct: 1305 FDSTQNNVSLDLECELMRRFGMPDWMVALYHLVRSYWLLVAPKEALRGCWKKHSGEPGTL 1364
Query: 180 DDNTDYNIAVIYSEYDITTQTV 245
NT +N+ V++ Y+ +V
Sbjct: 1365 LWNTVWNMTVLHHVYEFDRPSV 1386
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 33.9 bits (74), Expect = 3.3
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +3
Query: 9 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
AFD SQ + E + ++ ++ + +K + + G MR TGE T+ N
Sbjct: 1643 AFDVSQDHTILAFEVELLKHFGWDDKVLQSYIKMKCTLGCRLGGFAIMRFTGEFSTFLFN 1702
Query: 189 TDYNIAVIYSEYDITTQT 242
T N+ + Y++ T
Sbjct: 1703 TLANMVFTFCRYEVPDGT 1720
>UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis E
virus|Rep: Nonstructural protein - Hepatitis E virus
Length = 1717
Score = 33.5 bits (73), Expect = 4.3
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +3
Query: 12 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMR-----LTGEPGT 176
FD +Q+ ++ LE ME +P LI L+ +++ T Q P ++ +GEPGT
Sbjct: 1488 FDSTQNNFSLGLECVIMEECGMPQWLIRLYHLVRSAWTLQ-APKESLKGFWKKHSGEPGT 1546
Query: 177 YDDNTDYNIAVIYSEYD 227
NT +N+A+I Y+
Sbjct: 1547 LLWNTVWNMAIIAHCYE 1563
>UniRef50_Q5VI74 Cluster: RNA-dependent RNA polymerase; n=1;
Fragaria chiloensis latent virus|Rep: RNA-dependent RNA
polymerase - Fragaria chiloensis latent virus
Length = 786
Score = 33.1 bits (72), Expect = 5.7
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Frame = +3
Query: 12 FDQSQHGEAVVLERKKMERLSIPSHLID--LHCYIKTNITSQFG---PLTCMRLTGEPGT 176
FD+SQ +++K RL +P D +++++I+ G + R TG+ T
Sbjct: 543 FDKSQQELHHEVQKKIFLRLGLPRDFCDTWFTSHVRSHISDPSGLRFSVNFQRRTGDAVT 602
Query: 177 YDDNTDYNIAVIYSEYDITTQTVFVSV 257
Y NT +AV+ YD++ V + V
Sbjct: 603 YLGNTVVTLAVLSYVYDLSDPNVLMVV 629
>UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep:
T7N9.5 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1436
Score = 33.1 bits (72), Expect = 5.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 15 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP 140
D+S V E K + +PSHL D HCY T T++ P
Sbjct: 883 DESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSP 924
>UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 548
Score = 33.1 bits (72), Expect = 5.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 90 IDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 188
+DLHC+IK + FGP+ + L G YD+N
Sbjct: 279 VDLHCFIKKFVN--FGPIESVYLINSNGIYDNN 309
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,556,241
Number of Sequences: 1657284
Number of extensions: 9667208
Number of successful extensions: 23530
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 22737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23519
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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