Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060616.seq
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   4.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 83   SSYRPPLLHQNQHYKSIWTFDLHAPY 160
            + Y  P+L QN  + ++ T+D H  +
Sbjct: 1571 AGYDVPVLAQNLDWVAVMTYDFHGQW 1596


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 177 YDDNTDYNIAVIYSEYDITTQTVFVSVMIL*YHLHLLLTPIGT 305
           +D  T+ NIA   S   +   T+F+S   +  +L   L+P+ T
Sbjct: 93  FDKFTNRNIATNESADPLAFHTLFISKDAVWRNLRTKLSPVFT 135


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 328 ERKEWRNGVPIGVSRRW 278
           + ++WRN  P   + RW
Sbjct: 360 DEQQWRNNQPSTSNNRW 376


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,637
Number of Sequences: 336
Number of extensions: 2308
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)