Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060616.seq
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0142 - 21107878-21109104                                         29   3.1  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    29   4.1  
03_05_0935 - 28948368-28948769,28949028-28949120,28949240-289493...    27   9.4  

>09_06_0142 - 21107878-21109104
          Length = 408

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 108 IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 206
           I   +   FG L C+ + GEPG Y   T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -2

Query: 110 DVAMEVYKMRWNGK 69
           D+AMEVYK+ WNG+
Sbjct: 689 DIAMEVYKIVWNGQ 702


>03_05_0935 -
           28948368-28948769,28949028-28949120,28949240-28949329,
           28949413-28949477,28950442-28950512,28950610-28950648,
           28950832-28951250
          Length = 392

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 539 DLLAKRVQKACRESGLQQTH*GKTLFCQ 456
           ++ A+R ++A RE  L  TH G+TLF Q
Sbjct: 99  EIAARRAREAGREYELIPTHRGETLFTQ 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,107,102
Number of Sequences: 37544
Number of extensions: 278682
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)