Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060616.seq
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     31   0.59 
SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)               29   3.1  

>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 116 GFDVAMEVYKMRWNGKPLHFLPFQNNGLTMLRLV 15
           G + AME  K+ WN     F+P+++ G+++L  V
Sbjct: 795 GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 828


>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
          Length = 635

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 120 ITSQFGPLTCMRLTGEPGTYDDNTDYNIAV-IYSEYDITTQTV 245
           +   F P + +R+  EPG Y  ++ + +AV +YS  ++ + +V
Sbjct: 437 LEEHFPPSSGVRIIAEPGRYYSSSSFTLAVNVYSRREVQSSSV 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,643
Number of Sequences: 59808
Number of extensions: 319627
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)