Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060616.seq
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +2

Query: 71  FHSISSYRPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRXLQRVRHHH 235
           + S + + PP  H +QH+ S      H     + H   QHG           HHH
Sbjct: 305 YPSTAGFLPPSYHPHQHHPS----QYHPHRGSSPH--HQHGNHTMGPTMGPPHHH 353


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 152 HAGQRSKLTCNV 117
           H G+R+ LTC+V
Sbjct: 623 HLGERTTLTCSV 634


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 518 GLSWPADQVXLSXRA 562
           G+ WP D   LS R+
Sbjct: 90  GMRWPGDATGLSNRS 104


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 452 LPDKIASYLSEFV 490
           LPD I +YL++FV
Sbjct: 332 LPDGIRNYLTKFV 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,876
Number of Sequences: 438
Number of extensions: 2749
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)