Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060616.seq
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66235.1 68414.m07518 expressed protein ; expression supporte...    29   2.6  
At1g08470.1 68414.m00938 strictosidine synthase family protein s...    28   4.5  

>At1g66235.1 68414.m07518 expressed protein ; expression supported
           by MPSS
          Length = 265

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 41  CFGTEENGAAFHSISSYRPPLLHQNQHYKSIWTFD 145
           C     +GA+   I +    +L Q++H+KS W FD
Sbjct: 63  CENRRSSGASSDDIFNQAKEMLMQDKHFKSGWKFD 97


>At1g08470.1 68414.m00938 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 390

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 16  TNLSMVRPLFWNGRKWSGFPFHLIL*TSIATSKPTL 123
           T ++  R LFWNG +W+ F +     + +   KP+L
Sbjct: 84  TGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSL 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,975,034
Number of Sequences: 28952
Number of extensions: 215166
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)