Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060614.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         28   1.4  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      27   1.9  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    26   5.8  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    26   5.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.7  

>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 288 IMHKRYMKSIKKTLHTLPCI*HTHAYIHVFFAYC 389
           + HK ++ S+ K  +TLP +    A + + F YC
Sbjct: 24  VSHKLWVSSLNKFQYTLPLLISNFAGLGIAFIYC 57


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 234 KISHYSVRAIFVKRDTKFLLHVLIYYYQHPNFTIKKNI 121
           K+ H SVR I +K D    L   + YY  P+F  KK+I
Sbjct: 134 KLYHKSVRIIPLKIDRYARLVAGVQYYPIPHFFWKKDI 171


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 471 HYRQIILKTNNLFSILNLTTHFKQ*KFDNKQKIH 370
           H  +++ K N+ FS L+    FK+ K DN   +H
Sbjct: 82  HILKLMQKNNDTFSALHHLPWFKRKKVDNSLFLH 115


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -1

Query: 432 SILNLTTHFKQ*KFDNKQKIHVYMRVCVKYMVVYVMFSLLISCI---FYALFKKNISIVH 262
           S+ +L  +F+   F N    HVY+ V  K+  +Y M + +++ +     +LF ++ S+ +
Sbjct: 401 SVFSLQPYFRDRYFKN----HVYLGVVDKFHKLYAMENPVVTSVRTLGLSLFDRSASLKN 456

Query: 261 FFL 253
           F L
Sbjct: 457 FIL 459


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 288 FKKNISIVHFFLYSL*VWKISHYSVRAIFV 199
           +   +   +FFLY L +WK   Y ++ +++
Sbjct: 435 YASRVRFDYFFLYDLKLWKSLRYKLQELYL 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,228
Number of Sequences: 5004
Number of extensions: 52148
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)